PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G020900.3 | ||||||||
Common Name | POPTR_0019s03750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 434aa MW: 48264.6 Da PI: 5.6221 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.7 | 1.5e-29 | 200 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGG AtPk +l+ m+v+gLt++hvkSHLQkYR+ Potri.019G020900.3 200 KSRMRWTPELHEAFVEAVNQLGG---ATPKGVLKQMNVEGLTIYHVKSHLQKYRT 251 68*******************99...89**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.924 | 197 | 254 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-17 | 198 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-28 | 199 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-22 | 200 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-11 | 202 | 250 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 282 | 329 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MIRNPASQQA SPLSSGNGSV GHLVSSSSRF TNDTSVSAVS PQGKQSHNSP FISQSLRDGG 60 NFPPTHYSHS EGQSTAFINH SDDNKGLSWP IDPLQEFINF VENVPVQNGQ VESTAGVIAS 120 EDHAKRTDWQ EWADQLISVD DELEPNWSEI LNDVNMKDSK QKMLSPNNSV QQPLIHQHQT 180 AHSGEVCAVT NPLLAAPPTK SRMRWTPELH EAFVEAVNQL GGATPKGVLK QMNVEGLTIY 240 HVKSHLQKYR TARYKPESSE GTSEKKLSPV EEMKSLDLKT SMEISEALRL QMEVQKQLHE 300 QLEIQRNLQL RIEEQGRYLQ EMFEKQKKME GDRSKAPPPS QNDPSLLQSK LEQSPANDKL 360 ETSDLDCVKT RFDICNASAL LEESSQSINR KQKAPEDRNC QVVDKNEEKT SLAPVKRPRT 420 DEATALSAEP ASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-27 | 200 | 255 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G020900.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447350.1 | 0.0 | protein PHR1-LIKE 1 isoform X1 | ||||
Swissprot | Q8GUN5 | 3e-95 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A2K1WN81 | 0.0 | A0A2K1WN81_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s03750.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 5e-98 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G020900.3 |
Entrez Gene | 7465946 |
Publications ? help Back to Top | |||
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