PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G006600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 194aa MW: 21538.4 Da PI: 4.6658 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59 | 1.2e-18 | 42 | 93 | 1 | 52 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCke 52 rW+kqe+laL+e+r++m+ ++r++ k+plWeevs+k+ e g++rs+k+C+e Potri.019G006600.1 42 RWPKQETLALLEIRSDMDVAFRDSVVKAPLWEEVSRKLNELGYNRSAKKCQE 93 8*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.00E-19 | 41 | 93 | No hit | No description |
Pfam | PF13837 | 8.9E-11 | 41 | 93 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEASTTFLEN SSAAAGDWED EEGDEGMRVQ AEEGVQCSTA NRWPKQETLA LLEIRSDMDV 60 AFRDSVVKAP LWEEVSRKLN ELGYNRSAKK CQENKGIVAI DPSSMEIMES LDNEFLSTAK 120 LSLPYSEMPP ILKLGRKMLS TSVPQARHLC VTFLILESFT AANWCCRGDH GREKWTLLLK 180 GVCEGQSSDS AKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G006600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211306 | 1e-126 | AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1WMP1 | 1e-140 | A0A2K1WMP1_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-23 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G006600.1 |