PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G139300.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 274aa MW: 30375.4 Da PI: 10.4121

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G139300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	37.7	4e-12	221	244	2	25
--SS-EEEEEEE--TT-SS-EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYY 25 D+++WrKYGqK++kgs++pr Y+ Potri.018G139300.2 221 ADEFSWRKYGQKPIKGSPYPRYYF 244 69********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.0E-18	173	218	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-11	208	244	IPR003657	WRKY domain
PROSITE profile	PS50811	12.702	215	244	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-9	218	244	IPR003657	WRKY domain
SMART	SM00774	1.4E-5	220	258	IPR003657	WRKY domain
Pfam	PF03106	4.6E-8	222	244	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:1990841	Molecular Function	promoter-specific chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAVDLVGYSK MEDQMAIQEA ASAGIKSMEH LIFALSNQTQ QSHQLDCREI TSFTVAKFKQ 60 VISILNRTGH ARFRRGPTSS NPVSVRPVVQ EPQKLNLDFF KSNNTFKSET KNDLSFGSQY 120 SKDCFSSGTT TSSFLSSVTA DGSVSDGKQG GSSSLFGTHP RPTGKPPLSS IHRKKCHDHT 180 LSTSKISSSG GSCHCSKRRK SRVKRTIRVP AISSKVADIP ADEFSWRKYG QKPIKGSPYP 240 RYYFILCLDH PPLTMHDFWS KSNKYDHKSM IVK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269\|PubMed:11722756}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G139300.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325248.2	1e-178	WRKY transcription factor WRKY51
Swissprot	Q9SV15	2e-74	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A2I4KKS6	1e-176	A0A2I4KKS6_POPTR; WRKY family protein
TrEMBL	B9IN40	1e-176	B9IN40_POPTR; Uncharacterized protein
STRING	POPTR_0018s13600.1	1e-177	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	8e-64	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Potri.018G139300.2

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]