PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G139300.1 | ||||||||
Common Name | POPTR_0018s13600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 33009.3 Da PI: 10.3821 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.6e-31 | 221 | 279 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeH+h+ Potri.018G139300.1 221 ADEFSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAVDDPAMLIVTYEGEHRHS 279 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.3E-18 | 173 | 218 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-32 | 208 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 215 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-26 | 218 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-37 | 220 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 222 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAVDLVGYSK MEDQMAIQEA ASAGIKSMEH LIFALSNQTQ QSHQLDCREI TSFTVAKFKQ 60 VISILNRTGH ARFRRGPTSS NPVSVRPVVQ EPQKLNLDFF KSNNTFKSET KNDLSFGSQY 120 SKDCFSSGTT TSSFLSSVTA DGSVSDGKQG GSSSLFGTHP RPTGKPPLSS IHRKKCHDHT 180 LSTSKISSSG GSCHCSKRRK SRVKRTIRVP AISSKVADIP ADEFSWRKYG QKPIKGSPYP 240 RGYYKCSSVR GCPARKHVER AVDDPAMLIV TYEGEHRHSH APLPENVTAN AAMRHVFQST 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 208 | 282 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G139300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325248.2 | 0.0 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q9SV15 | 1e-107 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B9IN40 | 0.0 | B9IN40_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s13600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 | Representative plant | OGRP3557 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-96 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G139300.1 |
Entrez Gene | 7484051 |