PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G109200.1
Common NamePOPTR_0018s11780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 550aa    MW: 62723.4 Da    PI: 9.4389
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G109200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-094592154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        s++kGV   + +g W ++I+       + +r++lg+f +++eAa a++ a+ kl+
  Potri.018G109200.1 45 SKFKGVVPLP-NGHWGCQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 92
                        7999998788.8******999......44**********99************98 PP
2B387.31.3e-27168260187
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+ltpsdv+k++r+v+pkk+a ++      + ++  +++l ++d+s + W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F+l 
  Potri.018G109200.1 168 FQKELTPSDVGKLNRIVIPKKYAIKYfphiseSAEEVDGVMLAFYDKSMKLWKFRYCYWKSSQSYVFTRGWNRFVKEKKLKANDTISFSLC 258
                         99***************************9986667799**************************************************97 PP

                         SS CS
                  B3  86 gr 87 
                         +r
  Potri.018G109200.1 259 ER 260
                         65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-1545102IPR016177DNA-binding domain
CDDcd000187.34E-2145101No hitNo description
PfamPF008472.6E-54592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1646102IPR001471AP2/ERF domain
SMARTSM003805.8E-1946107IPR001471AP2/ERF domain
PROSITE profilePS5103216.68746101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.0E-34163262IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-25167263No hitNo description
SuperFamilySSF1019368.89E-28167262IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-22168267IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014168277IPR003340B3 DNA binding domain
PfamPF023627.3E-25168261IPR003340B3 DNA binding domain
SuperFamilySSF516952.56E-12476542IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
PROSITE profilePS5000710.862476536IPR000909Phosphatidylinositol-specific phospholipase C, X domain
Gene3DG3DSA:3.20.20.1908.8E-9476542IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
PfamPF003882.7E-9476542IPR000909Phosphatidylinositol-specific phospholipase C, X domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008081Molecular Functionphosphoric diester hydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEDETVSLIS NGETSVVEEF SDSNSSTHPF PASKRARSGS NISASKFKGV VPLPNGHWGC  60
QIYANHQRIW LGTFKSEKEA AMAYDSAAIK LRSGDSRRNF PLTDVTVEEP KFQSYFSTEV  120
VLNMIKDGTY QCKFANFTRT CSQSVETELS LKLMMPQSNQ GLTCKQLFQK ELTPSDVGKL  180
NRIVIPKKYA IKYFPHISES AEEVDGVMLA FYDKSMKLWK FRYCYWKSSQ SYVFTRGWNR  240
FVKEKKLKAN DTISFSLCER GETVDSAAQT FNMIDVNNRE NSCSISELSS QSIASKVELQ  300
LNPGPLIARD STVKKKERMR GANKRTQNAE KYDNNHLHQE LQNQFYLKEQ FPNSNDSHEE  360
EEEEQEEDGK GGISRVKRMI KRVRIFMRTI SEKVGDGLDK KNERSNGNVN NDKRLSHQYH  420
VRPEAKDRAS YMNIGTYKFG ANCKFNHPIR RKNQAQLLLL PPPPPLLLLE LLFGFVFSRH  480
SLINPVDLLV CLRAIKNSAF QASEYPVVIT LVRPPTANLQ AKVAEMVTKT VGGMLYCPKI  540
DQLQEFRYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-3116425610101DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G109200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158400.0AC215840.1 Populus trichocarpa clone POP043-C12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446356.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024446357.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3N7GB040.0A0A3N7GB04_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20040.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-93RAV family protein