PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G063000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1107aa    MW: 124229 Da    PI: 6.1433
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G063000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.5e-21126226198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g + +p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + 
  Potri.018G063000.1 126 FCKTLTASDTSTHGGFFVPRRAAEKIfppldfSMQPPA-QELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRIFTGDSVLFIR- 214
                         99*****************************9445444.38************************************************4. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                          +++ +l+++++ 
  Potri.018G063000.1 215 -DEKSQLLLGIRH 226
                         .466667888875 PP
2Auxin_resp116.32.6e-38252334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnP+as+seFv++++k++ka++++ s+GmRf+m+f te+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Potri.018G063000.1 252 AAHAAANNSPFTIFYNPSASPSEFVIPFSKYNKAMYTQGSLGMRFRMMFTTEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334
                         79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-40117241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-18125225No hitNo description
PfamPF023621.2E-19126226IPR003340B3 DNA binding domain
SMARTSM010199.7E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773126228IPR003340B3 DNA binding domain
PfamPF065072.6E-33252334IPR010525Auxin response factor
PfamPF023094.7E-109851076IPR033389AUX/IAA domain
PROSITE profilePS5174524.6649901083IPR000270PB1 domain
SuperFamilySSF542772.85E-910011068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MKVPSNGFLP NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFVPSYPNL TSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYDKEALL ASDLGQKQSR  120
QPTEFFCKTL TASDTSTHGG FFVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRIFTGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSLIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPSA SPSEFVIPFS KYNKAMYTQG SLGMRFRMMF  300
TTEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TASERPNRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP NDESDTENAF KRAVPWLGDE FGKKDAASSI FPGLSLVQWM  420
SMQQNNQFQA AQSGFFPPMV PSNDLQKNLS TDDPSKLLNF QAPGLSAPSI QFNKTNSENQ  480
VGQLRRPPMA WTQQQQLQQL LQTSINQQQP PYPQQPQPQL QQSISQEQHH EHQHRPQPQP  540
QPQQQPQPQL QPQQIQQLPP QWQQLQQLQQ QIFQPPALND SVVSPNQIPN QNFQKPFVYS  600
QQQQQQQQQL LASNIQSQSI PSPNRSSYQL TSLPQDSQFH QQMEQQSNFS HRQQTQLQQS  660
PLLLLQQNPS QRVQPQPHQQ IQQLSQPDNS EQQLHLQLLQ NLQQQQQQQL LSPESLLLQS  720
QKLQQQQQTH QQNQQLHQSP LTQNQQPLGS NSFPTAAALM RTQSFPMNQL QGMQNATMAV  780
RYHSSITDGE APSCSTSPST NNWQISPLNF LNRNQQAPAM LMGDSAIEPA SNLVQELQSK  840
SEIHIKNEFP SLKGLDQLKY KGTVTDQLEA SSSGTSYCLD AGTIQQNFSA PTFGLDGDVQ  900
SHPASNIDAL APDTLLSREY DSQKDLQNLL VNYGGTAQDI NMELSTAAIS AQSFGVSNIP  960
FKPDGSNDIA INDTGILNNG AWTNQNQRMR TYTKVQKRGS VGRSIDITCY KGYDELRHDL  1020
ARMFGIEGQL EDPQSSDWKL VYVDRENDIL LVGDDPWEEF MSCVQSIKIL SSAEVQQMSL  1080
DGDLGNVPAP NQACSGTDSG NVWRGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G063000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445300.10.0auxin response factor 19 isoform X2
TrEMBLA0A2K1WWR10.0A0A2K1WWR1_POPTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Representative plantOGRP9033914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19