PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G058600.1
Common NamePOPTR_0018s04720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 385aa    MW: 42183.3 Da    PI: 7.3287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07125145526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ f++ G Ck Gd+C FaHg
  Potri.018G058600.1 125 ACPEFRK-GGCKKGDSCEFAHG 145
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.9E-5120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634121147IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042155179IPR000571Zinc finger, CCCH-type
SMARTSM0035611155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMIGEHPHHH PNPTVQIPQW DPYDDQTTSP SPSTIPSSPF TNFNALDSLT ALHRYLPSNE  60
PDPSFEDELD LPVDAFSCDH FRMYVFKVRR CGRGRSHDWT ECPYAHPGEK ARRRDPQRYH  120
YSGTACPEFR KGGCKKGDSC EFAHGVFECW LHPARYRTQP CKDGPACRRR VCFFAHTPEQ  180
LRLLPQHSPK GNGSGSWELD FGSLVMHPLD SYLTKAGSFV SSPTSILTSP PVSPPSDSPP  240
MSPVSPQVIG GSGSGSFNSM SELLASMRGL QLGKMKIGSP VGSWGVQSGS RFGSPRGSSL  300
RPGFCSLPST PTRTMATRSG LGQLDIWGDS STCEEEPAME RVESGRDLRA KIYAKLSKEN  360
SLDPDRVESA VSGPDVGWVS ELVK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.33110.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G058600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447420.0EF144742.1 Populus trichocarpa clone WS01117_K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324748.20.0zinc finger CCCH domain-containing protein 20
RefseqXP_024445958.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-119C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLB9ING60.0B9ING6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s04720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-106C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]