PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G019800.4 | ||||||||
Common Name | POPTR_0018s02470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 28553 Da PI: 9.6191 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 4.9e-31 | 103 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rsaedp++++ tYegeHnh Potri.018G019800.4 103 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 162 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-29 | 96 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.475 | 98 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-25 | 101 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-35 | 103 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 104 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSENKKLTE MLGVVCDNYM ALQKHLADLV SKNSVKEIST PISSRKRKAE SEDYSIVING 60 ISGGNAESSS IDEESSKRPK ENLKSKISRT YFRTSESDAS LVVKDGYQWR KYGQKVTRDN 120 PSPRAYYKCS FAPSCPVKKK VQRSAEDPSI LVATYEGEHN HASHSQHEPS LGSSHGSNFG 180 PIPTQSPIRS SAPTVTLDLI QSGRHGDTAT KTVQEMEVPA LQKILVQQMA SSLTRDPNFT 240 AALAAAISGR FNQTRMEKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-22 | 94 | 161 | 11 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-22 | 94 | 161 | 11 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8198 | 0.0 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G019800.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371762.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 5e-81 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | U5FH19 | 0.0 | U5FH19_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02470.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-83 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G019800.4 |
Entrez Gene | 7465416 |