PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019800.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 279aa    MW: 31405.5 Da    PI: 8.8649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857e-27164220156
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES-- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeH 56 
                         ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rsaedp++++ tYege 
  Potri.018G019800.3 164 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSAEDPSILVATYEGEY 220
                         58***************************99************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-26157221IPR003657WRKY domain
PROSITE profilePS5081123.468159220IPR003657WRKY domain
SuperFamilySSF1182908.89E-23162222IPR003657WRKY domain
SMARTSM007742.5E-28164224IPR003657WRKY domain
PfamPF031063.4E-21165219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESSWVNTSL DLNINPFKHV NESTQVQKIK KFEGYSTRVL EQKLQVKNED GVGVLVEELT  60
RMSSENKKLT EMLGVVCDNY MALQKHLADL VSKNSVKEIS TPISSRKRKA ESEDYSIVIN  120
GISGGNAESS SIDEESSKRP KENLKSKISR TYFRTSESDA SLVVKDGYQW RKYGQKVTRD  180
NPSPRAYYKC SFAPSCPVKK KVQRSAEDPS ILVATYEGEY CYKDCSRNGS ACTSKNFGPT  240
NGVFFDKRSK FYSCACSCYL WEIQPDSDGE MVKLLKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-181552201172Probable WRKY transcription factor 4
2lex_A3e-181552201172Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.81980.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371762.11e-154probable WRKY transcription factor 40
TrEMBLU5FH191e-152U5FH19_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02470.11e-153(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-63WRKY DNA-binding protein 18