PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G019800.2 | ||||||||
Common Name | POPTR_0018s02470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35342.7 Da PI: 9.39 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 6.9e-31 | 162 | 221 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rsaedp++++ tYegeHnh Potri.018G019800.2 162 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 221 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 155 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.475 | 157 | 223 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 160 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-35 | 162 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 163 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESSWVNTSL DLNINPFKHV NESTQKIKKF EGYSTRVLEQ KLQVKNEDGV GVLVEELTRM 60 SSENKKLTEM LGVVCDNYMA LQKHLADLVS KNSVKEISTP ISSRKRKAES EDYSIVINGI 120 SGGNAESSSI DEESSKRPKE NLKSKISRTY FRTSESDASL VVKDGYQWRK YGQKVTRDNP 180 SPRAYYKCSF APSCPVKKKV QRSAEDPSIL VATYEGEHNH ASHSQHEPSL GSSHGSNFGP 240 IPTQSPIRSS APTVTLDLIQ SGRHGDTATK TVQEMEVPAL QKILVQQMAS SLTRDPNFTA 300 ALAAAISGRF NQTRMEKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 153 | 220 | 11 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 153 | 220 | 11 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8198 | 0.0 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G019800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371762.1 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | U5FH19 | 0.0 | U5FH19_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02470.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-88 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G019800.2 |
Entrez Gene | 7465416 |