PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019700.1
Common NamePOPTR_0018s02480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 272aa    MW: 30475.4 Da    PI: 7.7384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.65.9e-29102161159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+ ed +v++  Y geHnhe
  Potri.018G019700.1 102 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApNCPVKKKVQRCVEDDSVLVASYDGEHNHE 161
                         58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-2992161IPR003657WRKY domain
PROSITE profilePS5081124.66297163IPR003657WRKY domain
SuperFamilySSF1182905.1E-2598162IPR003657WRKY domain
SMARTSM007744.5E-33102162IPR003657WRKY domain
PfamPF031061.5E-23103161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDVFPSCKEK VEALQFELEH RQKENESLRF MLGVMTRRFS ILQAEIQETE EHQQKTASNL  60
ADGDQACHEI LDSNKRARFE VPITKASRIL VRSHSNDKSL IVKDGYQWRK YGQKVTKDNP  120
SPRAYFRCSM APNCPVKKKV QRCVEDDSVL VASYDGEHNH EPNGSHGQYL CSPHTSSSKI  180
SITNHVLKCP IEIPPLQPSI ALDLTLSSPS NQQKENPSKR SMEDCGKINN NCNKNYIEEY  240
VASLTKDPTF SVALAAAVAS SMSDLSSSRM L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1987161172WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179340.0JN117934.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324328.10.0probable WRKY transcription factor 40
TrEMBLB9IL510.0B9IL51_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-40WRKY DNA-binding protein 40