PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G008500.1 | ||||||||
Common Name | POPTR_0018s03450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 36823.5 Da PI: 9.8889 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.5e-31 | 256 | 313 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp ++++tYegeH h+ Potri.018G008500.1 256 DEYSWRKYGQKPIKGSPYPRGYYKCSTMrGCPARKHVERATDDPAMLIVTYEGEHCHT 313 9************************9877***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-17 | 206 | 252 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.7E-32 | 242 | 313 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.194 | 249 | 315 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 252 | 313 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-37 | 254 | 314 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 256 | 312 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAVELMSFNT KMDDQSAIQE AASQGIKSME HLIRIMSHQN NHHVADCTDL TDVTVSKFKK 60 VISILNRTGH ARFRRGPIQP NQPAKSSFSL SPPSTSTQSP QSQSQSPSFS RFQNLTLTPQ 120 QITTPVTAPA APTSLTLDFT KPNIFSSKSA EIEFSKDSFS VSSNSASFMS SGITGDGSVS 180 NGKQGSSIFL GSAGKPPLST VPYSNKKRCH EHHHDDTVSG SSSGKCHCSS KRRKNRVKKT 240 IRVPAISSKI ADIPPDEYSW RKYGQKPIKG SPYPRGYYKC STMRGCPARK HVERATDDPA 300 MLIVTYEGEH CHTQGAMEGN MAAGTVNLVF ESTMMVGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 242 | 312 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G008500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377444 | 0.0 | GQ377444.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324382.1 | 0.0 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-133 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B9ILE4 | 0.0 | B9ILE4_POPTR; WRKY family protein | ||||
STRING | POPTR_0018s03450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 | Representative plant | OGRP3557 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-108 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G008500.1 |
Entrez Gene | 7476235 |