PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G005300.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 325aa    MW: 36374.4 Da    PI: 6.4369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G005300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed+ l d+ k +G g W+ I ++ g++R++k+c++rw +yl
  Potri.018G005300.2 14 KGAWTPLEDKMLMDYLKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 61
                        79********************************************97 PP
2Myb_DNA-binding53.65.3e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Potri.018G005300.2  67 RGNFSEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.204961IPR017930Myb domain
SuperFamilySSF466892.21E-2912108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002496.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231568IPR009057Homeodomain-like
CDDcd001671.29E-101661No hitNo description
PROSITE profilePS5129426.22762116IPR017930Myb domain
SMARTSM007176.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1567110IPR001005SANT/Myb domain
CDDcd001677.91E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2469115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRKPGCSKD GLNKGAWTPL EDKMLMDYLK IHGEGKWSNI VKETGLKRCG KSCRLRWMNY  60
LRPNIKRGNF SEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKAQHRQ  120
LRGQPKVDRK QIASGSQNGA ASNLKNQSTI ESQCTTGMVA ATTTLQENTA QDHQDNSIAM  180
AQSTNSNLQY DIPKTNENES SSKGLASGED DNSSNIMMYY DYMEDFSKIL DSDFTKFSDV  240
HDIISTDHHS NNTIEVNGDH HGVSINGCKS RETAEFPGKL VESDHWSSNK CIQADQGFDF  300
MSLLSFLDST DDEWTADALG TKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G005300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371801.11e-180myb-related protein 308
TrEMBLA0A2K1WTV40.0A0A2K1WTV4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03770.11e-179(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-58myb domain protein 6