PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G104900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 20819.1 Da PI: 8.203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.1 | 1.9e-11 | 35 | 75 | 5 | 46 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwd 46 +rF Ptd elv +yLk+k+ +k +el ++i++vd+yk++P++ Potri.017G104900.1 35 IRFAPTDVELVLYYLKRKICEKGFEL-DIIRDVDVYKWDPES 75 79************************.99***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-12 | 35 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-5 | 35 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MWAFLKLKKY IDIHAFIALM GNKMEEEDKS LAIEIRFAPT DVELVLYYLK RKICEKGFEL 60 DIIRDVDVYK WDPESYLSYP HWRATGNGTS SVQGIGDITL EQGQIGQPDR GGGKLQGEIA 120 VVHQEESELI GRCRSILCVK KNSGDGQMCR SFMPFTSFAK KVKWISWKLI SVHSLISPRR 180 CD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11987 | 8e-43 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G104900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ513224 | 6e-40 | DQ513224.1 Populus trichocarpa clone 528929 TIR-NBS-LRR-TIR type disease resistance protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444511.1 | 6e-53 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A2K1X629 | 1e-132 | A0A2K1X629_POPTR; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 8e-12 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G104900.1 |