PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G099800.1
Common NamePOPTR_0017s13410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29436.6 Da    PI: 10.0278
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G099800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++ rqvtfskRr+g+lKKA+E+SvLCda+vavi+fs++gkl+eys+
  Potri.017G099800.1  9 KRIENNISRQVTFSKRRTGLLKKAHEISVLCDADVAVIVFSTKGKLFEYST 59
                        79***********************************************96 PP
2K-box921e-30851731199
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +++ s+  e+ kL++++e Lqr++R++ G+dL++Ls+keLq+Leq+++++lk++Rs+Kn+l++e++ e+qkkek+lq++n+ L ++++
  Potri.017G099800.1  85 PEHQGSWFLEHPKLRARVELLQRNLRNYTGQDLDPLSYKELQHLEQKIDTALKSVRSRKNQLVHESLAEMQKKEKALQDQNNILVEQVK 173
                         567889999***************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
CDDcd002651.79E-41279No hitNo description
SuperFamilySSF554559.94E-33288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2587172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.13188182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVQLKR IENNISRQVT FSKRRTGLLK KAHEISVLCD ADVAVIVFST KGKLFEYSTD  60
SSMESILERY ERCSYAEQQF VPHGPEHQGS WFLEHPKLRA RVELLQRNLR NYTGQDLDPL  120
SYKELQHLEQ KIDTALKSVR SRKNQLVHES LAEMQKKEKA LQDQNNILVE QVKKKLKALT  180
EQAQWEQQNL GQNSSSFMLP QAQPPLQPSM LSHPPPTIGG SFQIRGFLNG NKDVEVQTQP  240
STMPHWMLRH VNDRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19170169MEF2C
5f28_B6e-19170169MEF2C
5f28_C6e-19170169MEF2C
5f28_D6e-19170169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117810.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G099800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151530.0AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373396.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-102AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLB9N6N70.0B9N6N7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13410.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-87AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]