PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G063300.1 | ||||||||
Common Name | POPTR_0017s09030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 27741.5 Da PI: 10.0009 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.3 | 2.1e-34 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgk 88 lp G+rFhPtdeelvv+yLk+kv g ++++ +vi+e+d+++ +P++Lp ++ +++ yfFs+++ + g++ +r++ sgyWk gk Potri.017G063300.1 14 LPIGYRFHPTDEELVVHYLKRKVLGLPMPA-SVIPEFDVFQNDPSSLPGNL---KEKRYFFSQKKWND-FGTKCKRTAGsgpSGYWKPIGK 99 699***************************.99***************544...45789**9987654.57888886555669******** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ ++++vg++ktLvf + +++ ++++Wvmh y l Potri.017G063300.1 100 GKQIVASdSNKAVGTRKTLVFKERKHSIKTRSQWVMHGYCL 140 ***999867778**********9999999**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-38 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.924 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-22 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MERPNFVENG GFKLPIGYRF HPTDEELVVH YLKRKVLGLP MPASVIPEFD VFQNDPSSLP 60 GNLKEKRYFF SQKKWNDFGT KCKRTAGSGP SGYWKPIGKG KQIVASDSNK AVGTRKTLVF 120 KERKHSIKTR SQWVMHGYCL AGSATGPKTT QMEEVGDWVA YSVFQRKRKP RKNVVISNPS 180 NINETRNVEI ISPSFMDFMM EQSSDGVGPP SPCSSGVTEV SSNEVDQEEI SSSSISLFSY 240 PCNRKRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-22 | 14 | 172 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 171 | QRKRKPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G063300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP769996 | 0.0 | KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373134.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | B9N0W9 | 0.0 | B9N0W9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s09030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 | Representative plant | OGRP11796 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-46 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G063300.1 |
Entrez Gene | 18107140 |