PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G062500.1 | ||||||||
Common Name | POPTR_0017s08950g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 145aa MW: 16492.4 Da PI: 10.362 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F ++ L H++ H Potri.017G062500.1 44 FPCLFCPRRFYTSQALGGHQNAH 66 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.22E-6 | 42 | 71 | No hit | No description |
PROSITE profile | PS50157 | 10.408 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MADPSLMHNF LNHQHQQYPS SSTSTPTKKS STNLPQYPSS YRHFPCLFCP RRFYTSQALG 60 GHQNAHRRER AAQRRNNKTL NTPISTDPSL RIPSSFVNHN HPATTSPPAV PFLNQYHQLQ 120 ALDPMMNRNY QFPLPSSGVY VSHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G062500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216452 | 0.0 | AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373125.2 | 1e-101 | zinc finger protein KNUCKLES | ||||
TrEMBL | A0A2K1X413 | 1e-100 | A0A2K1X413_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s08950.1 | 2e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15014 | 8 | 11 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 3e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G062500.1 |
Entrez Gene | 18107132 |