PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G058100.1
Common NamePOPTR_0017s08490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 409aa    MW: 46477.6 Da    PI: 4.5199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G058100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.41.5e-15171483128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiy...kvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          GfrF P d+elv +yL +k+++ + +++++v +++++++     ePw++  +  k + ++++fF+++ kk +   rk      g W++  
  Potri.017G058100.1  17 EGFRFLPDDQELVRFYLYPKITNPNlFTTFNVpVRDCHLFgnqAREPWQIWdSFPKRHGEDLFFFTQHTKKGRYVVRKIS-GGPGKWHQEY 106
                         7**********************99756667668888765211569****734445566788999999888665444444.46799***** PP

                 NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         kd +  ++   + +++ ++k++++ +   ++ ++ +W++ ey+l
  Potri.017G058100.1 107 KDPPFDVSidpNCKVTVIRKVFTYLN--PKSDHNGSWFLFEYSL 148
                         *9998877777888899*******95..4455699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-1711163IPR003441NAC domain
PROSITE profilePS5100520.83915163IPR003441NAC domain
PfamPF023659.8E-1217148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTISSQNPET QNLEILEGFR FLPDDQELVR FYLYPKITNP NLFTTFNVPV RDCHLFGNQA  60
REPWQIWDSF PKRHGEDLFF FTQHTKKGRY VVRKISGGPG KWHQEYKDPP FDVSIDPNCK  120
VTVIRKVFTY LNPKSDHNGS WFLFEYSLPS LSQLTVLCQL RKKEVHNPET VNLQRSTTKK  180
RKRVADIESV DDATNTILQK PRIDVLDHQQ QHIMGFDGLV DTVSQVENQQ QHLQLEPLCD  240
NGLGFGYFES FSCEDEQDFG IYLMATDSDS ISTSNAAPPS VSTFNPEENS RSLEFMSDEK  300
DGDAASALDH DFCLQLLDLS GCYDEADGFP ATKATARASA YWTQATPNLD ESLTSDAVDY  360
YLEHGVCDSS PTNWSGSFSQ MLLEAPTCLI QEKEIHMDSN PSLVERNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160182RKKEVHNPETVNLQRSTTKKRKR
2173181QRSTTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G058100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.11e-174PREDICTED: NAC transcription factor 29-like
TrEMBLA0A2K1X3T40.0A0A2K1X3T4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.12e-07vascular related NAC-domain protein 1