PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G055400.1
Common NameRAP2L3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 457aa    MW: 50112.2 Da    PI: 7.96
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G055400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19276324355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+g
  Potri.017G055400.1 276 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYMLRG 324
                         8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-30274334No hitNo description
PROSITE profilePS5103222.247275332IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-22275333IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-31275333IPR001471AP2/ERF domain
SMARTSM003804.0E-35275338IPR001471AP2/ERF domain
PfamPF008473.8E-12276324IPR001471AP2/ERF domain
PRINTSPR003672.2E-10276287IPR001471AP2/ERF domain
PRINTSPR003672.2E-10298314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEDQFPKIET FMHKELVAAY CSFHGMATGS KYFGDPTIWG ALSGATCRVE DGNSGMKSPS  60
QSSSERLFSS SESSSSADDQ VSGTDLIGNI PGFGKQDVVK QDHESCFMSG LNSINALGAN  120
SISDQTIKES SIPVNFLEPF PTLKNQAQVP EPPSPSSLSK SPNLTLFSQE PAAASLLHPS  180
KRVLDPPGKD QRCEPAMSLF PNTSFSMPQL GQVHCQPSNE WLKINQTLAN YSTKGFNDYW  240
LSTTKTQPMK YSGRKLQNHH QKPSFSSAST SPGKLFRGVR QRHWGKWVAE IRLPRNRTRV  300
WLGTFDTAED AAIAYDTAAY MLRGDYAHLN FPDLKHQLKS SSLNRTITAL LEAKLQAISS  360
QGNNISGQNK HISDPPPPSP SKINVHATDA TKLKGLSQNT TRKEWQFELR GKSGGEVIEN  420
KKGQEVVASD IDAIQLSRMP SLDMDMIWDA LLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20271332163ATERF1
3gcc_A1e-20271332163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G055400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559440.0EF155944.1 Populus trichocarpa RAP2-like protein (RAP2L3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323984.30.0ethylene-responsive transcription factor ERF062
TrEMBLA9PL930.0A9PL93_POPTR; RAP2-like protein
STRINGPOPTR_0017s08250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-66ERF family protein