PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G031600.1 | ||||||||
Common Name | POPTR_0017s06000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 30214.3 Da PI: 6.044 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.3 | 1.6e-28 | 2 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +p GfrF+Ptdeel+ ++L +k++g++++l ++i e+++y+ eP+dL+ + ++ ++ e y++++r+ +y+ + + +g Wkat + Potri.017G031600.1 2 VPHGFRFNPTDEELI-QFLDRKASGQEMPL-HFILETNVYEREPQDLEwNqTTPLSNGERYYYCTREINYS-----REVLGRGWWKATSHV 85 589************.9*************.89**************9542333366699******99985.....347889********* PP NAM 90 kevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 k+++++ ++ lvg k+ L+f+ + ++++++kt+W+m ey+l Potri.017G031600.1 86 KKIHANndDQLLVGNKRPLTFHrfkdnERNRNNAVKTNWIMYEYSL 131 ****98544555**********7776556778889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-31 | 2 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.182 | 2 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-16 | 3 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVPHGFRFNP TDEELIQFLD RKASGQEMPL HFILETNVYE REPQDLEWNQ TTPLSNGERY 60 YYCTREINYS REVLGRGWWK ATSHVKKIHA NNDDQLLVGN KRPLTFHRFK DNERNRNNAV 120 KTNWIMYEYS LESRTTLWKL CKIKHKGKPS VQEEMESMRE QYSSRNDFEA GSSTNFVGGQ 180 QQQEQTILPT NYEGYDQHQS YYQWNNMQQL PPSPYDPYLP APPSTSSGHY YVEQQEKLEP 240 SDEHPFPSLW SWTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 2 | 146 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G031600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 1e-165 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372888.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | B9MY19 | 0.0 | B9MY19_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s06000.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15526 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 3e-22 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G031600.1 |
Entrez Gene | 18106932 |