PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G029100.1 | ||||||||
Common Name | POPTR_0017s05780g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28553.2 Da PI: 7.0197 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.7 | 4.8e-29 | 86 | 173 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkwevtk+++eH+H+l+p Potri.017G029100.1 86 FYNAYATRIGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKASSGKWEVTKFVKEHTHSLTP 173 ******************************************9988..9**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-26 | 86 | 173 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFIVDNDAN GDIAGNVAVD IARARDENEI VENSVEGEFE QYDHKMDKES LAIDMIPDAV 60 PAMSMVAADE PYMGQEFDSE ASAHAFYNAY ATRIGFVIRV SKLSRSRRDG SAIGRALVCN 120 KEGFRMPDKR EKIVRQRAET RVGCRAMILV RKASSGKWEV TKFVKEHTHS LTPGKARRDC 180 IYDQYPNEHD KIRELSQQLA LEKKRAATYK RHLELIFEQI EEHNESLSKK IQHIVHSVRG 240 MENKPQQSQT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G029100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 0.0 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372863.2 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_024448818.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Refseq | XP_024448819.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2 | ||||
TrEMBL | A0A2K1R5Z1 | 0.0 | A0A2K1R5Z1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s05780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 | Representative plant | OGRP10299 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-114 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G029100.1 |
Entrez Gene | 18106909 |