PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G020400.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 691aa MW: 79025 Da PI: 5.0948

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G020400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	203.7	1.1e-62	8	359	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 Ll+cA+a++ gdl+la++l++ + + d+ +l++yf+eAL +r+++ ly +p++ ++ s+ + ++ ++ +P++ f+ Potri.017G020400.1 8 KLLDCAKAIEVGDLHLADSLIKDILT------DNDDKLVKYFAEALVRRVYK----LY-PRNPRPLVPSCSDLRGNM---DYQFFPFFWFA 84 79*****************99864......67789***********....44.334444443334444444...4899*** PP GRAS 95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 lt+ + I++a+ g++rv +iDf+++ +G W Ll+ + ++++ s+ +T +g+ s++ + l+e+ e L k A++l ++fe + +va+ Potri.017G020400.1 85 ELTTHNSIVDALTGKKRVQVIDFSLMaNGQRWSFLLDDYLKHSSDAISFHLTSIGPILSKKGDYLNEILEELPKEAKKLPIEFEVKHMVAS 175 ********************8725777*********************9999***********************9999 PP GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl. 271 + +++ +L++++ +E+++V + ++lh+ll++++++e vL+ +k+l+P++++vveqea++n+++Fle f+++++y+s +fdsl Potri.017G020400.1 176 SPAEMVEAALKLERsseDETIVVRWEFELHKLLAQPGAIET----VLSKLKELKPEIMIVVEQEASLNGQDFLECFTKSFRYHSIIFDSLg 262 87777788888887778*****************999....*****************************************6 PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 + ++ ++ ++ +++ +++++r+i+n+va+e ++++ rh+t+++Wr+rl ++GF+ v+l+++ + + + +y++ee++ vl+ Potri.017G020400.1 263 KDNF-EHGNHGKVLWEMYFRRQISNLVAQEDTDQIVRHQTFAEWRDRLCRSGFRHVRLRNQFKGSF---FGHLP--EYHMEEKNRHPVLYR 347 6666.4446666666778************************************98766543...33333..48899****** PP GRAS 363 kdrpLvsvSaWr 374 + pL+++SaW+ Potri.017G020400.1 348 QYDPLLFTSAWK 359 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.5	1	344	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-60	8	359	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MATPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYFAEALVRR VYKLYPRNPR 60 PLVPSCSDLR GNMDYQFFPF FWFAELTTHN SIVDALTGKK RVQVIDFSLM ANGQRWSFLL 120 DDYLKHSSDA ISFHLTSIGP ILSKKGDYLN EILEELPKEA KKLPIEFEVK HMVASSPAEM 180 VEAALKLERS SEDETIVVRW EFELHKLLAQ PGAIETVLSK LKELKPEIMI VVEQEASLNG 240 QDFLECFTKS FRYHSIIFDS LGKDNFEHGN HGKVLWEMYF RRQISNLVAQ EDTDQIVRHQ 300 TFAEWRDRLC RSGFRHVRLR NQFKGSFFGH LPEYHMEEKN RHPVLYRQYD PLLFTSAWKS 360 YPTQLNSESL DNWNQESAMG DGNIMQIESS SLLILSGTVS SSTFLEDQPD DEHIIMEGKV 420 WSPECISINQ VAASAEIFDM LEYICHVNYL PLALTWMSDR RILRLEKSAC YVNDSTMVEF 480 MEACGEHHLE EGKGVAGKAL QSNSMYFVSD IYKLDVKDYP FIFEAWDFGL RGVVAIKLES 540 VYVSSIDYVV EFFLPLKMKE ISGQRLLINE ITNILQKNSR NSWKVCTQEL NGFNISSEVE 600 VTMEEVGTSN IRPAAISDSP LQALSEIGSL NSSQIRELCN IFKPTGDGVE VPEAHDQSTS 660 SAWLSLHRNL RNKIPYLDLK LISSQTVMSW *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MATPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYFAEALVRR VYKLYPRNPR  60
PLVPSCSDLR GNMDYQFFPF FWFAELTTHN SIVDALTGKK RVQVIDFSLM ANGQRWSFLL  120
DDYLKHSSDA ISFHLTSIGP ILSKKGDYLN EILEELPKEA KKLPIEFEVK HMVASSPAEM  180
VEAALKLERS SEDETIVVRW EFELHKLLAQ PGAIETVLSK LKELKPEIMI VVEQEASLNG  240
QDFLECFTKS FRYHSIIFDS LGKDNFEHGN HGKVLWEMYF RRQISNLVAQ EDTDQIVRHQ  300
TFAEWRDRLC RSGFRHVRLR NQFKGSFFGH LPEYHMEEKN RHPVLYRQYD PLLFTSAWKS  360
YPTQLNSESL DNWNQESAMG DGNIMQIESS SLLILSGTVS SSTFLEDQPD DEHIIMEGKV  420
WSPECISINQ VAASAEIFDM LEYICHVNYL PLALTWMSDR RILRLEKSAC YVNDSTMVEF  480
MEACGEHHLE EGKGVAGKAL QSNSMYFVSD IYKLDVKDYP FIFEAWDFGL RGVVAIKLES  540
VYVSSIDYVV EFFLPLKMKE ISGQRLLINE ITNILQKNSR NSWKVCTQEL NGFNISSEVE  600
VTMEEVGTSN IRPAAISDSP LQALSEIGSL NSSQIRELCN IFKPTGDGVE VPEAHDQSTS  660
SAWLSLHRNL RNKIPYLDLK LISSQTVMSW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	5e-17	9	317	37	370	Protein SHORT-ROOT
5b3h_E	5e-17	9	317	37	370	Protein SHORT-ROOT
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G020400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372781.2	0.0	uncharacterized protein LOC18106830
TrEMBL	A0A2K1X227	0.0	A0A2K1X227_POPTR; Uncharacterized protein
STRING	POPTR_0017s04990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15862	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-67	GRAS family protein

Link Out ? help Back to Top
Phytozome	Potri.017G020400.1