PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G137900.1
Common NamePOPTR_0016s14490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 322aa    MW: 36044.9 Da    PI: 6.2307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G137900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.3e-23130190259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ ++++pr+Y+rCt++   +C++ k+v+r +e+p +  +tY g+H+++
  Potri.016G137900.1 130 DDGHAWRKYGQKVILNAKYPRNYFRCTHKydqQCQAIKQVQRIQEEPPLYRTTYYGHHTCK 190
                         8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-24114190IPR003657WRKY domain
PROSITE profilePS5081119.52124187IPR003657WRKY domain
SuperFamilySSF1182901.29E-23125190IPR003657WRKY domain
SMARTSM007743.2E-34129191IPR003657WRKY domain
PfamPF031066.2E-23130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDSSWHGNLP ANRKKAIDEL VRGQEIAAQL KLVMNKSIGV DESVFAEDLV KKIMNSFNSS  60
LYILNGGEFD EVASQIPQVG SPCWDGRKSS KDSGESGRGT AELKVKDRRG CYKRRKSSHS  120
RTDDSTTLTD DGHAWRKYGQ KVILNAKYPR NYFRCTHKYD QQCQAIKQVQ RIQEEPPLYR  180
TTYYGHHTCK NLLKASQFVL DPSDHHDIDS SILISFKSNG DHASNKPSNS LLTSFQTVKQ  240
ECCHKEDDMN IPISYDPTTQ YNNQASSSDY LLSPDDYMSA FDHGDVISGV NSSCTTSSHS  300
LDMDGIMMES ADFDDDGVFG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22130190969OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.113410.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G137900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323675.20.0probable WRKY transcription factor 70
TrEMBLA0A2K1XFB70.0A0A2K1XFB7_POPTR; WRKY family protein
STRINGPOPTR_0016s14490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-35WRKY DNA-binding protein 70