PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G126100.1
Common NamePOPTR_0016s13380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 474aa    MW: 53118.1 Da    PI: 5.1358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G126100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-1974132155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+p++ g    kr  r +lg+f ta eAa+a++ a+++++g
  Potri.016G126100.1  74 CRYRGVRQRT-WGKWVAEIREPVKKGsvtnKRrIRLWLGTFSTAIEAARAYDYAARAMYG 132
                         78*****999.**********777444666445************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1274132IPR001471AP2/ERF domain
CDDcd000181.86E-1874141No hitNo description
PROSITE profilePS5103223.35475140IPR001471AP2/ERF domain
SMARTSM003801.4E-3375146IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1975141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2975141IPR001471AP2/ERF domain
PRINTSPR003671.4E-97687IPR001471AP2/ERF domain
PRINTSPR003671.4E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSIDMEDSLR QSSALGFSSK NKKKWQRRRN GCESVEDTLA KWKKNNKLQI TKVPGKGSKK  60
GCMKGKGGPE NKSCRYRGVR QRTWGKWVAE IREPVKKGSV TNKRRIRLWL GTFSTAIEAA  120
RAYDYAARAM YGPNAILNFP DYSHESGDQL GSLSSSMTAT ESKTTLDNYE DNKVERLKMG  180
YCGSREVNKQ SGSSGIYAVN ESEEEVEKFQ VAESSGRELK AEVWDLTNEL MSSHHVEAEA  240
PVLRGEMDGD LAEIVESWGC HGIDDRYDFL QNETENVEYK LKNEIAESRL SNRLHECLSS  300
DHDMRTDRKS FYDAQMPLTT GEEFSGLTVG NSNHFEARHD EIDLGLCNPE IDIKPFIQGI  360
PDSSALKGER NYGYVHGEVH AASQLQSGRP PELSWQLQSG RPPELSWQLQ SPGTNLPGSL  420
SYIQEADLGG GCNFDLSKQD INWGLVGEPE LLINWGLVGE PELLDPWFPE LQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1776140360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G126100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105500.0AC210550.1 Populus trichocarpa clone POP049-H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323615.30.0dehydration-responsive element-binding protein 2B isoform X1
RefseqXP_024443491.10.0dehydration-responsive element-binding protein 2B isoform X1
TrEMBLA0A2K1XET50.0A0A2K1XET5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s13380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.15e-23ERF family protein