PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G123400.1
Common NamePOPTR_0016s13140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 409aa    MW: 46644.2 Da    PI: 6.3277
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G123400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.21.7e-281024004277
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                         l+ +  ea++++++ela+ +  r+s+ + p+g+  +Rl  y  + L + +             +++s    ++  +al++f++++P   +s
  Potri.016G123400.1 102 LVKAYKEAMENQEAELAEVITRRISKKVGPTGEIKERLLYYSFQPLDKEIDY----------LTQES---AKNFDKALEAFYKIFPDGMIS 179
                         333446799999**************************************98..........22333...4556678889*********** PP

                GRAS  95 hltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRpeg............ppslRiTgvgspesg......skeelee 160
                         h+taN+ Ilea  ++       + +HiiDfd+++G+QW +++ aL  ++++              +l++T+++ +++g      s ++ ee
  Potri.016G123400.1 180 HFTANSVILEAKPRDadvcrtnNVLHIIDFDMGEGMQWSSMIMALGRKQKElqaqqyyghiphYSTLKLTAIKWKDEGsghyvpSWRKFEE 270
                         **********976664444443666*********************99966666778888754559*******9888899999999***** PP

                GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe. 245
                         t++rL++ A+ +g+ +e + +   +l+dl  ++++ k+     +E la n++ +l ++ +++  ++ +  +++++ k++ + ++v ++   
  Potri.016G123400.1 271 TKRRLHDCANPFGLILEVEEV---ELQDL-ARKIKGKRkggerREWLAFNCMWALSQMARKR--SRRHVLDFVRTAKEILASIFVYSNTSn 355
                         *******************98...45555.3444444444444***************8333..333468999999*********998774 PP

                GRAS 246 ...adhnse..........sFlerflealeyysalfdsleaklpr 277
                            +  +++           F   f +++e+y al++s+e k+p+
  Potri.016G123400.1 356 ggiLTFGDGgawelfkdcpAFGFFFDNCMEHYQALLESIEWKFPS 400
                         4432223337888888888888889999**********9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.83473409IPR005202Transcription factor GRAS
PfamPF035145.8E-26102400IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDVDIHHFES SHPLATTDST SNELVDFPGP KGYLSKGLEE SCSFQPYSSE GKVTEKCSPK  60
PSTIWSAGAI SISTMDASLI QQPLTLPTGD MEIDNQLSVH HLVKAYKEAM ENQEAELAEV  120
ITRRISKKVG PTGEIKERLL YYSFQPLDKE IDYLTQESAK NFDKALEAFY KIFPDGMISH  180
FTANSVILEA KPRDADVCRT NNVLHIIDFD MGEGMQWSSM IMALGRKQKE LQAQQYYGHI  240
PHYSTLKLTA IKWKDEGSGH YVPSWRKFEE TKRRLHDCAN PFGLILEVEE VELQDLARKI  300
KGKRKGGERR EWLAFNCMWA LSQMARKRSR RHVLDFVRTA KEILASIFVY SNTSNGGILT  360
FGDGGAWELF KDCPAFGFFF DNCMEHYQAL LESIEWKFPS CFIEARIAM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G123400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165440.0AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015890.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2K1XEQ80.0A0A2K1XEQ8_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0016s13120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-10RGA-like 2