PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G123200.1
Common NamePOPTR_0016s13120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 334aa    MW: 38554.1 Da    PI: 6.6912
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G123200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS773.4e-24312677238
                GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                         +  ea++++++ela+ +  r+s+ + p+g+  + l  y  + L +               +++s    ++   al++f++++P   +sh+t
  Potri.016G123200.1  31 AYKEAMENKEAELAEVITRRISKKVGPTGEIEEHLLYYSFQPLDKETDY----------FTQES---AKNFDGALEAFYKIFPDGMISHFT 108
                         4457888888999999999999999999999999999999999887766..........23333...4556677889************** PP

                GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg............ppslRiTgvgspesg......skeeleetgerLakfA 169
                         aN+ Ilea  ++ e++HiiDfd+++G+QW +++ aL  ++++              +l++T+++ +++g      s ++ eet++rL++  
  Potri.016G123200.1 109 ANSVILEAKPRDaEALHIIDFDMGEGMQWSSIIMALGRKQKElqaqqyyghiphYMTLKLTAIKWKDEGsghdvpSWRKFEETKRRLHDCT 199
                         ********98887999*********************99966666778888744448*******98888999999999************* PP

                GRAS 170 eelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                         + +g+ +e + +   +l+dl  ++   ++    +E la n++ +l +l ++  s + +  +++++ k++ + +
  Potri.016G123200.1 200 NPFGLILEVEEV---ELQDLARKMKGKRKggerREWLAFNFMWALSQLARK-RSRR-HVLDFVRTAKEILASI 267
                         **********98...5666644333333355559**************822.2222.2455555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.7871333IPR005202Transcription factor GRAS
PfamPF035141.2E-2131267IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDASLIQQPL TLPTGDMEID NQLSVHHLVK AYKEAMENKE AELAEVITRR ISKKVGPTGE  60
IEEHLLYYSF QPLDKETDYF TQESAKNFDG ALEAFYKIFP DGMISHFTAN SVILEAKPRD  120
AEALHIIDFD MGEGMQWSSI IMALGRKQKE LQAQQYYGHI PHYMTLKLTA IKWKDEGSGH  180
DVPSWRKFEE TKRRLHDCTN PFGLILEVEE VELQDLARKM KGKRKGGERR EWLAFNFMWA  240
LSQLARKRSR RHVLDFVRTA KEILASISVY SNTSNRGFWL EGLRLSNESL LEAKEMVREG  300
EAPYAVRIEG ENYNEMVLEF RGTQLIKFSA RKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G123200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165440.0AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015890.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2K1XEP70.0A0A2K1XEP7_POPTR; Uncharacterized protein
STRINGPOPTR_0016s13120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-09RGA-like 2