PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G098100.1
Common NamePOPTR_0016s10790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 296aa    MW: 32240 Da    PI: 8.3989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G098100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045116138123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C+++F++   L  H  +H
  Potri.016G098100.1 116 YECKICNRRFPSFQALGGHRASH 138
                         99**********99999998887 PP
2zf-C2H212.80.00035196218123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Potri.016G098100.1 196 HECSICGDEFSSGQALGGHMRRH 218
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.2E-13115140IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346116143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-8116138No hitNo description
SMARTSM003550.021116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-8191218No hitNo description
PfamPF139127.0E-12195220IPR007087Zinc finger, C2H2
SMARTSM003550.022196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99196223IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGSQAMVSKE LSQIIKGKRA KRQRPSSPLT LAITCSSASV GENGGERGQR IYNNSSSSDP  60
STSVKFTGRT DEEEDMANCL ILLAQGNRQN FKLSKPVTAA ATTITYTNKD AGLYAYECKI  120
CNRRFPSFQA LGGHRASHKK SRQGNISEDK KALAVTVRMG DQEENGNDND MSTALSLQIV  180
NDGVLCSNNV KSNKVHECSI CGDEFSSGQA LGGHMRRHRA FAPTTTATAT TLTSRSLERS  240
KPDHESEESK KPRDIQLLDL NLPAAEDDLR ESKFHFASKE QVLVFTASSL VDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G098100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323497.10.0zinc finger protein ZAT5
TrEMBLB9IFU20.0B9IFU2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.19e-55C2H2 family protein