PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G083600.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 470aa MW: 51535.3 Da PI: 9.6694 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.4e-32 | 187 | 243 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k Potri.016G083600.3 187 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 243 9***************************************.***************85 PP | |||||||
2 | WRKY | 104.6 | 5.4e-33 | 388 | 445 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK v+g+++prsYYrCts +C+v+k+ver+++dpk++++tYeg+Hnhe Potri.016G083600.3 388 GDGFRWRKYGQKIVRGNPYPRSYYRCTSLKCNVRKHVERASDDPKAFITTYEGKHNHE 445 5********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-29 | 176 | 244 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 185 | 244 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 185 | 243 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-25 | 187 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 187 | 244 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-34 | 372 | 447 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-28 | 381 | 447 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.98 | 382 | 447 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 387 | 446 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-26 | 389 | 445 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MEIKESERVV IAKPVASRPS CSKFRSFSEL LAGAINTSPS TDCSEMAVAA IRPKTLRFRP 60 TVNRAPGALV SSQVELSGTT LSNSSNRVSS TDSKTTVIYK PQAKFVSKAT VSLLASMGNF 120 NTNSQQMLQS VEARPQCPKQ NKQNFSSQLT SNLHQNIPSH AVLLTSQNQE DPKALSHASN 180 GDRASYDGYN WRKYGQKQVK GSEYPRSYYK CTYPNCPVKK KVERSFDGQI AEIVYKGEHN 240 HSKPQPPKRN SSGTQGLGAV SDSNAQDRYT TPLWSNQLIE RNEGSEGREE NQIETGLQVH 300 SIYQGKPPPS CDRAGTGSIN AGAGTSDNSC GLNGECNDGS KGLEGDDDEP RNKRRKAGIQ 360 SNKGGISGEG VQEPRVVVQS STDSEILGDG FRWRKYGQKI VRGNPYPRSY YRCTSLKCNV 420 RKHVERASDD PKAFITTYEG KHNHEMPLKS TNIQPLNPDL QAPPSRDKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-32 | 187 | 447 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-32 | 187 | 447 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11896 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G083600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179608 | 1e-161 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443283.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024443284.1 | 0.0 | WRKY transcription factor 44 | ||||
TrEMBL | A0A2K1XCR6 | 0.0 | A0A2K1XCR6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 1e-113 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G083600.3 |