PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G083600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 470aa    MW: 51535.3 Da    PI: 9.6694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G083600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32187243360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Potri.016G083600.1 187 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 243
                         9***************************************.***************85 PP
2WRKY104.65.4e-33388445259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK v+g+++prsYYrCts +C+v+k+ver+++dpk++++tYeg+Hnhe
  Potri.016G083600.1 388 GDGFRWRKYGQKIVRGNPYPRSYYRCTSLKCNVRKHVERASDDPKAFITTYEGKHNHE 445
                         5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29176244IPR003657WRKY domain
SuperFamilySSF1182901.83E-25185244IPR003657WRKY domain
SMARTSM007741.8E-36185243IPR003657WRKY domain
PfamPF031063.6E-25187241IPR003657WRKY domain
PROSITE profilePS5081123.617187244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34372447IPR003657WRKY domain
SuperFamilySSF1182904.18E-28381447IPR003657WRKY domain
PROSITE profilePS5081134.98382447IPR003657WRKY domain
SMARTSM007743.3E-38387446IPR003657WRKY domain
PfamPF031066.8E-26389445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSKFRSFSEL LAGAINTSPS TDCSEMAVAA IRPKTLRFRP  60
TVNRAPGALV SSQVELSGTT LSNSSNRVSS TDSKTTVIYK PQAKFVSKAT VSLLASMGNF  120
NTNSQQMLQS VEARPQCPKQ NKQNFSSQLT SNLHQNIPSH AVLLTSQNQE DPKALSHASN  180
GDRASYDGYN WRKYGQKQVK GSEYPRSYYK CTYPNCPVKK KVERSFDGQI AEIVYKGEHN  240
HSKPQPPKRN SSGTQGLGAV SDSNAQDRYT TPLWSNQLIE RNEGSEGREE NQIETGLQVH  300
SIYQGKPPPS CDRAGTGSIN AGAGTSDNSC GLNGECNDGS KGLEGDDDEP RNKRRKAGIQ  360
SNKGGISGEG VQEPRVVVQS STDSEILGDG FRWRKYGQKI VRGNPYPRSY YRCTSLKCNV  420
RKHVERASDD PKAFITTYEG KHNHEMPLKS TNIQPLNPDL QAPPSRDKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32187447877Probable WRKY transcription factor 4
2lex_A2e-32187447877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118960.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G083600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-161EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443283.10.0WRKY transcription factor 44
RefseqXP_024443284.10.0WRKY transcription factor 44
TrEMBLA0A2K1XCR60.0A0A2K1XCR6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Representative plantOGRP10259810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-113WRKY family protein