PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G076100.1 | ||||||||
Common Name | POPTR_0016s07690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 28696.8 Da PI: 6.4037 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.6 | 7.6e-43 | 4 | 137 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 ppG+rF Pt+eel+++yL++k++g + ++++i+ diy+++PwdLp+ ++ ++ ++w+fF++r++++a+g r++r t++gyW Potri.016G076100.1 4 PPGYRFFPTEEELISFYLHHKLDGGSedlnQVINQIIPVRDIYEHDPWDLPQfsgglHHIKDPEQWFFFIPRQESEARGGRPKRLTNTGYW 94 9***********************9955533333457777***********6577753334567*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 katg+ +v+s +++ +glk+t+vfy+grap+g+kt+W m+ey+ Potri.016G076100.1 95 KATGSPGSVFS-NNRSIGLKRTMVFYSGRAPNGRKTEWKMNEYK 137 ***********.9999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-46 | 2 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.198 | 3 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-22 | 4 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVFPPGYRFF PTEEELISFY LHHKLDGGSE DLNQVINQII PVRDIYEHDP WDLPQFSGGL 60 HHIKDPEQWF FFIPRQESEA RGGRPKRLTN TGYWKATGSP GSVFSNNRSI GLKRTMVFYS 120 GRAPNGRKTE WKMNEYKAID QGKASSSTSA NPKLRHEYSL CRVYKNSKSM RAFDRRPVGL 180 EVIEPRTQPA SGGNELVASD QNHPTVENTS SPDSSWSADQ GNPSGTGESS SMPMPIDNAM 240 WDVDLDWYYG AGQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 1 | 169 | 18 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G076100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323414.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-68 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | B9IIS2 | 0.0 | B9IIS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-70 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G076100.1 |
Entrez Gene | 7470254 |
Publications ? help Back to Top | |||
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