PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G076000.1 | ||||||||
Common Name | POPTR_0016s07680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29589 Da PI: 6.1721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.8 | 1.1e-41 | 3 | 137 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +pGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy ++Pw+Lp+ ++++ +e++fF++r+k++a+g r++r t++gyWk Potri.016G076000.1 3 MPGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPQfsgdLCHGDPEECFFFIPRQKSEAHGGRPKRLTATGYWK 93 59**********************9977744434449999***********65675444567799************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 atg+ +v+s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+ Potri.016G076000.1 94 ATGSPGSVYSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 137 *********9855666***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.207 | 2 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-21 | 4 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-45 | 4 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDMPGFRFYP TEEELVSFYL RNKLEARRED LLRVMDRLIP VLDIYGFNPW ELPQFSGDLC 60 HGDPEECFFF IPRQKSEAHG GRPKRLTATG YWKATGSPGS VYSSKSNRCI GEKRTMVFYN 120 GRAPNGQKTD WKMNEYKAIK EEEASSSSGA YPKLREEFSL CRVYKKSNFV RAFDRRPLGV 180 ENMVQMRAQT APDDGATAFH QSPSAGEITC SHDSSTSGHH GQPFQTGEIS DMAIDNEPIW 240 EWEQLDQYWS KQGHSDQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-31 | 4 | 168 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-31 | 4 | 168 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-31 | 4 | 168 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-31 | 4 | 168 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 4 | 168 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-31 | 4 | 168 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-31 | 4 | 168 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G076000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 3e-70 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442908.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 8e-75 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2K1XCD1 | 0.0 | A0A2K1XCD1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07680.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-75 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G076000.1 |
Entrez Gene | 7465255 |
Publications ? help Back to Top | |||
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