PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G068100.1
Common NamePOPTR_0016s06850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 485aa    MW: 52142.9 Da    PI: 6.0553
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G068100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.2e-141151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+  r+ ++ kRr g+lKK +EL +LC++e+ vii+s++
  Potri.016G068100.1 11 IVNDAARKASLKKRRVGLLKKVSELTILCGIEAFVIIYSPD 51
                        669999*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.371149IPR002100Transcription factor, MADS-box
CDDcd002661.01E-25285No hitNo description
PRINTSPR004041.4E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-20394IPR002100Transcription factor, MADS-box
PfamPF003193.5E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MARKKVKLMW IVNDAARKAS LKKRRVGLLK KVSELTILCG IEAFVIIYSP DDPEPAIWPS  60
LPDVQRLVTR FRNIPVMERG KKMMNQESYL KERMGKLNDQ SRKHLKKNRE LEMADLMQQV  120
YQDKGFDGLD QTQLCGLAWL VAEKMKDIRK RVEYFQQIPP LQDASLPPGP FPPQYPNEDD  180
GGGGDETGGQ VVGEPGDGRN NPTDGGVPWD QWFTDIINNR EHNVAGGSST KSDLGLRHPF  240
NITGVSSGGG ADIGFHPGQN DGGGSSTSNL FGLGLSRSRN IGDISGGNIF HQGLLPHDND  300
ILRGRSSCGN NFDLGLPIGS NMIGCNNAGN SFDTWLPRGL GFNPGGNTSA GNNFDLGLAQ  360
GNDTRSDSTG GNNFDQWLPH FENMGDNSAA VNNVHPWLAA GGDIGGESLG LGLLPGTRFS  420
GSSTGENPFH GLHGNMHHLG NSGAADSIDG GSDLGHPGFF GTGSSDLRLP FDVTKNWLND  480
NFNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIVNDAARKASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G068100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042569.10.0PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like
TrEMBLA0A2K1XBV50.0A0A2K1XBV5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-34AGAMOUS-like 80