PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G056500.1 | ||||||||
Common Name | POPTR_0016s05680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 229aa MW: 26486 Da PI: 7.2967 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.4 | 1.3e-34 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y ++ed++++e+isw+e+g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg++e Potri.016G056500.1 19 FLLKTYMLVEDPATDEVISWNEEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERE 100 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Potri.016G056500.1 101 LLCQIRRRKA 110 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.22E-33 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-36 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-53 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-31 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MANDKGLLEY VRKSTPPPFL LKTYMLVEDP ATDEVISWNE EGTGFVVWQP AEFARDLLPT 60 LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERE LLCQIRRRKA WSSKQQPIAP 120 IQVTTQEFEE DQRSSSTSSS SEYTTLVDEN KRLKKENGVL STELTSMNRK CKELLDLVAK 180 YAHLEKEEED ERPKLFGVRL EAEGDRERKR KRAEISESAS ILLSQSCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-21 | 14 | 108 | 15 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G056500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323320.2 | 1e-169 | heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 1e-75 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | B9II85 | 1e-167 | B9II85_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05680.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 2e-73 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G056500.1 |
Entrez Gene | 7468987 |