PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G053700.1
Common NamePOPTR_0016s05410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 733aa    MW: 79679.5 Da    PI: 6.5064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G053700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07308328526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Potri.016G053700.1 308 PCPDFRK-GACRRGDMCEYAHG 328
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.62E-1538165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-1686179IPR020683Ankyrin repeat-containing domain
CDDcd002049.97E-1486165No hitNo description
SMARTSM002480.03687117IPR002110Ankyrin repeat
PfamPF127961.8E-987156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.33587163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.861122157IPR002110Ankyrin repeat
SMARTSM002481.7E-4122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4308330IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5308328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582308330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035633338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MCCRLERLKL AATPTPPTIY FDKSRPSNID MNHLTIKTED AFASLLELAA NNDVEGFKKS  60
IECDPSCADE IGLWYGRQKG SKQMVNDLRT PLMVAATYGS IDVIKVILSL SDVDVSRSCG  120
ADKSTALHCA ASGGAVNAVD VVKLLLAAGA DCNLVDANGH RPIDVINVPP KLQDARLILE  180
EFLAADGSLV EHEHNLRVSI ATMNSNSPPL SPSRENGSPL SGSDSPMKSK LYEAPVSFVS  240
ERKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KFHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTNC ARRVCFFAHT  360
VEELRPLYVS TGSAVPSPRS GTSGAAAMDF ASAMNLLPGS PSAASIMSPS SFTPPMSPSG  420
NGMSHSSLAW PQPNVPALLL PGSNMQSSRL RSSFNARDIP ADYSFLPEFD VQQQQLLSEL  480
SSLTQPSLSN NSLNRSGRLK ALTPSNLDDY FSAESSSPRH ADQALASAVF SPTHNSAFLN  540
QFQQQQSMLS PINTNFSPKN GDHPLLQASF ASGRMSPRSV ESISPMSSRA SMLAQREKQL  600
QQLRSLSSRE LGSNAAAIVG SPVNTWSKWG SSNGKPDWTV STDELGKLRR SNSFELGNGD  660
EPDLSWVQSL VKESPTEMKE KLSMPVSGSV AASASSSESS NVNSQIEPID LDHVVGSWVE  720
LLQIDQLVAQ QN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.156160.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G053700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323312.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9II600.0B9II60_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]