PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G053300.1
Common NamePOPTR_0016s05370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 828aa    MW: 93086.6 Da    PI: 4.9651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G053300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.9e-09766819147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                         + +WT+ E+e+l+++v+++ ++    Wk I ++      +gRt  ++k++w++ 
  Potri.016G053300.1 766 KVPWTAHEEEILKEGVQKFASDgkyPWKDILEYGSsvfsNGRTTIDLKDKWRNM 819
                         579******************************99*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.7E-6476537IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.64E-7477538IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS512949.717761826IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-11761822IPR009057Homeodomain-like
SuperFamilySSF466896.21E-11763821IPR009057Homeodomain-like
SMARTSM007171.8E-5765822IPR001005SANT/Myb domain
CDDcd116601.19E-14767821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MTVGLRLCDL NSLEKALMDD PSSSATTLAW LWVIEYLASF RQIEPSILHE LIEAAPEIPD  60
DLGKNTREMV ALRCLEDLFC RSDNGIANDV TSKELKVTFD LSESCEDVLQ SILQETSVSD  120
LNRGGPELLK WDIHPFIMHK RACMPKCALE KVKDAILEGI HPYASLKEYS ELVNANDRGN  180
RITTDYGDDG APVGRIGGSD TDGQINPPEE SSIPLLHENE NVVEDNSYNR NLLHFERERS  240
GSASQNLAGD HEDQGCVDGD HLQPQAKRFK EDALHDNLSM GQISSTPPQH KDMVEDSFEM  300
VVEDSENRDF HLEKESSQGG LEGSIPVEND HDEDVGIDRH GHSLDADNAF QHNQHEIAHN  360
ANKMPLSGDG LHQYSFVDEI NRAEPRKSNA APSVGTSDRL FVNGNKGKSD HSGQQKPSNS  420
VSSNGFHRNT DADEREAGTD HLSEEDESNE SDEYEQERVD VGLRKSHFLS SQYMLSHDSL  480
AEANWTDQNL CIKCCKDGQL LVCGAGSCSL VIHENCLVFS PHFDERGDFY CPFCAYSLAI  540
SEYLEAKKKA YSARKELKLF IETRQEYRSN KHTQRLLSKR HGSSRQNEDK DLLNKFLDYE  600
NLVGEKRKQS NNRGQISEGN DHQFQKGKGK KKQVEPLASC IGVNSLCREE EPDVNVRTNH  660
ISTVEKEGEE VVQENSSGTE LDINQHQVSV DPKYSVDNHL CKEKEIVSGS QRTDGRRQKA  720
VCAISSDGGE TSGDEDDKSI STNYFIRFRK RERQYTPAMP QSRRKKVPWT AHEEEILKEG  780
VQKFASDGKY PWKDILEYGS SVFSNGRTTI DLKDKWRNMC KLSPKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1626632GKGKKKQ
2748765RKRERQYTPAMPQSRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G053300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826862e-46AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443805.10.0uncharacterized protein LOC7484006 isoform X1
TrEMBLB9II560.0B9II56_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-08MYB_related family protein