PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G027900.1
Common NamePOPTR_0016s02780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 341aa    MW: 38186.6 Da    PI: 4.6206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G027900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.23.7e-2491392127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyWk 84 
                         ppGf+F Pt+eel+++yL +k++g+ + ++ + ik+ d+y   ePw++ +k+++   +++ +yf ++ +kk+++g  + nr+  t+ g+W+
  Potri.016G027900.1   9 PPGFKFVPTEEELINYYLYNKIHGRFHGEDATlIKDYDLYGEeEPWEIFNKFQGhkfGDNGLYFLTTLHKKTTNGIkNMNRSvgTHGGTWH 99 
                         89**********************997776656******97549****75443333388899**********99862567744588***** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           g  kev+s++g ++g+kk + ++  ++ k++k  W++ ey 
  Potri.016G027900.1 100 GDGG-KEVKSSEGVVIGTKKRFRYH--KHGKPVKDGWILLEYG 139
                         9998.789998**************..556666********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-256141IPR003441NAC domain
PROSITE profilePS5100528.1318155IPR003441NAC domain
PfamPF023654.8E-179138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MENGLPRPPP GFKFVPTEEE LINYYLYNKI HGRFHGEDAT LIKDYDLYGE EEPWEIFNKF  60
QGHKFGDNGL YFLTTLHKKT TNGIKNMNRS VGTHGGTWHG DGGKEVKSSE GVVIGTKKRF  120
RYHKHGKPVK DGWILLEYGS ESISENIVIS QLKKSERGSS NDKEPTSRKR KHINAEVFEV  180
AEDDDILKIM QSIVINSIPI RSPALEPQQI IQNQDTWLEA ATVSMELGAS VTVDSGPDLS  240
LAQEPQQITA NQEMWLEAAS VAWENDGGFS TAYSFDDEIS FVNGEPVGLQ FEPGLGNFIQ  300
EPMINEHQQM ALACFSGNHE EKPISVEDYE LMGLSEATFQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-13913818140NO APICAL MERISTEM PROTEIN
1ut4_B4e-13913818140NO APICAL MERISTEM PROTEIN
1ut7_A4e-13913818140NO APICAL MERISTEM PROTEIN
1ut7_B4e-13913818140NO APICAL MERISTEM PROTEIN
3swm_A3e-13913821143NAC domain-containing protein 19
3swm_B3e-13913821143NAC domain-containing protein 19
3swm_C3e-13913821143NAC domain-containing protein 19
3swm_D3e-13913821143NAC domain-containing protein 19
3swp_A3e-13913821143NAC domain-containing protein 19
3swp_B3e-13913821143NAC domain-containing protein 19
3swp_C3e-13913821143NAC domain-containing protein 19
3swp_D3e-13913821143NAC domain-containing protein 19
4dul_A4e-13913818140NAC domain-containing protein 19
4dul_B4e-13913818140NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G027900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323203.10.0NAC domain-containing protein 91
TrEMBLB9IHI90.0B9IHI9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-13NAC domain containing protein 38