PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G026000.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 464aa MW: 53357 Da PI: 4.4845 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 116.5 | 3.4e-36 | 2 | 171 | 202 | 374 |
GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++Vn+ + lh+ll++++++e+ vL+ vk+l ++++v+veqea++ns+++ er+ ++++yy + f+s ++ ++ ++ +++++r Potri.016G026000.3 2 VVVNWNFILHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERIEQSFQYYCTTFESRQTP-----SQTPVLREMYFRR 83 89*******************....*********************************************999.....7888999999*** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak.qaklllrkvk.sdg...yrveeesgslv.lgWkdrpLvsvSaWr 374 +i nv+aceg +r+er e++++W++r + aGF pvp + ++ k + ++ l++ + +d y +ee++g + l W++ pL ++S+W+ Potri.016G026000.3 84 QIGNVLACEGVDRVERIESFAQWQNRPSLAGFCPVPQKADEFKeDFQHCLEEEYgEDYleaYGIEEKEGHNIlLSWHGFPLAVASVWK 171 ***********************************98876654156666666552443566999999887766**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.176 | 1 | 145 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-33 | 2 | 171 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MVVVNWNFIL HKLLAQDGAM EQVLSKVKDL GADIMVIVEQ EANLNSPDLS ERIEQSFQYY 60 CTTFESRQTP SQTPVLREMY FRRQIGNVLA CEGVDRVERI ESFAQWQNRP SLAGFCPVPQ 120 KADEFKEDFQ HCLEEEYGED YLEAYGIEEK EGHNILLSWH GFPLAVASVW KVTDPPQFSG 180 GRYTMQDTVD DSEGMASSSE SEDDEENESL VCRMADRNLW STQGSSMNRI AASAKLYDIL 240 EYICHLHRLP LAVTWIFCNR GGNTDSKGKR ILCIDDSARY VNHWQMDAFV DQYARRRLEK 300 GQGIAGKALQ SNIHIEQHIS VLHRDEFLYE DYGPSWCPEA YHAAFAIRLT STHPCMDDCV 360 LEFLLPRFRM KDTSELVLLI NEVLRTLQRK CLKMWEVSVR EVNEASGSEV RLDDERMPNI 420 PHEDGVLEGN EFMTVNPTSN QAEETREPLE QVLFYTEFMS FFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G026000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443926.1 | 0.0 | uncharacterized protein LOC7458891 | ||||
TrEMBL | A0A3N7G5D1 | 0.0 | A0A3N7G5D1_POPTR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-34 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G026000.3 |