PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G018100.5

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 791aa MW: 89844.2 Da PI: 6.6555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G018100.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	7.9e-24	99	183	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF +++++s++sk+ng++++ + Cs+ g+++e++ + ++r+ t+t+Cka +++k+++d+kw+++ +++eHnHe++ Potri.016G018100.5 99 FYRDYALSVGFGITIKASRRSKKNGKFIDVKIACSRFGSKRESSVT----VNPRSCTKTDCKAGMHMKRTEDEKWVIYGFVKEHNHEIC 183 9**************************************99888....99*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-21	99	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-22	266	358	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-6	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.087	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MEIDLELPSS DQEKLESGAN TNECILDSAS ELRGIDEAAS SCLVEEVVEA CGLNAIEGVI 60 DGGDKVEESG VGVDGVGEGG ISVPQNGLKF ETKEAAYAFY RDYALSVGFG ITIKASRRSK 120 KNGKFIDVKI ACSRFGSKRE SSVTVNPRSC TKTDCKAGMH MKRTEDEKWV IYGFVKEHNH 180 EICKEDYDNA TGRRNKQSGA VARPKKGLQL ALDEDDVKVM LEYFMCMQAE NSTFFYAIDL 240 DHEKRMRNVF WIDAKGRHDY HSVCDVVFFD TFYVSSKYKL PFVPIIGVNN HFQFVLLGCA 300 LIGEHSASSF LWLMHTWLKA VGGQAPKVII TDQERFLNEA VVDVFPDTLH YYSLWHVFSK 360 IPENLSPVMN QSEIFMLKFN KCIYQSQTDE QFEKRWWKMV DRFELREDEW VHSLYENRIK 420 WVPTFIRDIS LAGMSTTERS GSVASFFDKY IHREAVFKEF MEQYKAFLED GYEMEAKAEF 480 ETQNKQPALR SLSSFEKQAS TLYTDAIFKK FQVEVLGVVS CHLKKESEDE ATINFRVDDF 540 EERQNFLVSW NKSTMDICCI CRSFEYRGFL CKHAILVLQM SGVSNIPSRY ILKRWTKGAK 600 INQAVDKVSK SLHYRVQRFN DLCKQAIKLG KEGSLSKEAY DIAVRTLEEV LENCVGLNNS 660 VKSVLEPNTL DVLGFPGFEE ENCDNCLAKS SKKKRTYKKK KGQLNSISPF RDGYYSNQQG 720 LPVLGQLHLI PTHVSHFGAP LSMQGLGQLG FRAPTMQTSF SNLPDLEQPV SSTQFNGIAS 780 KHLHDKHLSS *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MEIDLELPSS DQEKLESGAN TNECILDSAS ELRGIDEAAS SCLVEEVVEA CGLNAIEGVI  60
DGGDKVEESG VGVDGVGEGG ISVPQNGLKF ETKEAAYAFY RDYALSVGFG ITIKASRRSK  120
KNGKFIDVKI ACSRFGSKRE SSVTVNPRSC TKTDCKAGMH MKRTEDEKWV IYGFVKEHNH  180
EICKEDYDNA TGRRNKQSGA VARPKKGLQL ALDEDDVKVM LEYFMCMQAE NSTFFYAIDL  240
DHEKRMRNVF WIDAKGRHDY HSVCDVVFFD TFYVSSKYKL PFVPIIGVNN HFQFVLLGCA  300
LIGEHSASSF LWLMHTWLKA VGGQAPKVII TDQERFLNEA VVDVFPDTLH YYSLWHVFSK  360
IPENLSPVMN QSEIFMLKFN KCIYQSQTDE QFEKRWWKMV DRFELREDEW VHSLYENRIK  420
WVPTFIRDIS LAGMSTTERS GSVASFFDKY IHREAVFKEF MEQYKAFLED GYEMEAKAEF  480
ETQNKQPALR SLSSFEKQAS TLYTDAIFKK FQVEVLGVVS CHLKKESEDE ATINFRVDDF  540
EERQNFLVSW NKSTMDICCI CRSFEYRGFL CKHAILVLQM SGVSNIPSRY ILKRWTKGAK  600
INQAVDKVSK SLHYRVQRFN DLCKQAIKLG KEGSLSKEAY DIAVRTLEEV LENCVGLNNS  660
VKSVLEPNTL DVLGFPGFEE ENCDNCLAKS SKKKRTYKKK KGQLNSISPF RDGYYSNQQG  720
LPVLGQLHLI PTHVSHFGAP LSMQGLGQLG FRAPTMQTSF SNLPDLEQPV SSTQFNGIAS  780
KHLHDKHLSS *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G018100.5

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU230043	1e-130	CU230043.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443610.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X7
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A3N7G1T3	0.0	A0A3N7G1T3_POPTR; Uncharacterized protein
TrEMBL	A0A3N7H1J4	0.0	A0A3N7H1J4_POPTR; Uncharacterized protein
STRING	POPTR_0016s01960.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Potri.016G018100.5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]