PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G018100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 852aa MW: 96512.3 Da PI: 6.3794 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.8 | 8.8e-24 | 99 | 183 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF +++++s++sk+ng++++ + Cs+ g+++e++ + ++r+ t+t+Cka +++k+++d+kw+++ +++eHnHe++ Potri.016G018100.2 99 FYRDYALSVGFGITIKASRRSKKNGKFIDVKIACSRFGSKRESSVT----VNPRSCTKTDCKAGMHMKRTEDEKWVIYGFVKEHNHEIC 183 9****************************************99888....99***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-21 | 99 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-22 | 266 | 358 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.6E-6 | 546 | 580 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.087 | 546 | 582 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.5E-6 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MEIDLELPSS DQEKLESGAN TNECILDSAS ELRGIDEAAS SCLVEEVVEA CGLNAIEGVI 60 DGGDKVEESG VGVDGVGEGG ISVPQNGLKF ETKEAAYAFY RDYALSVGFG ITIKASRRSK 120 KNGKFIDVKI ACSRFGSKRE SSVTVNPRSC TKTDCKAGMH MKRTEDEKWV IYGFVKEHNH 180 EICKEDYDNA TGRRNKQSGA VARPKKGLQL ALDEDDVKVM LEYFMCMQAE NSTFFYAIDL 240 DHEKRMRNVF WIDAKGRHDY HSVCDVVFFD TFYVSSKYKL PFVPIIGVNN HFQFVLLGCA 300 LIGEHSASSF LWLMHTWLKA VGGQAPKVII TDQERFLNEA VVDVFPDTLH YYSLWHVFSK 360 IPENLSPVMN QSEIFMLKFN KCIYQSQTDE QFEKRWWKMV DRFELREDEW VHSLYENRIK 420 WVPTFIRDIS LAGMSTTERS GSVASFFDKY IHREAVFKEF MEQYKAFLED GYEMEAKAEF 480 ETQNKQPALR SLSSFEKQAS TLYTDAIFKK FQVEVLGVVS CHLKKESEDE ATINFRVDDF 540 EERQNFLVSW NKSTMDICCI CRSFEYRGFL CKHAILVLQM SGVSNIPSRY ILKRWTKGAK 600 INQAVDKVSK SLHYRVQRFN DLCKQAIKLG KEGSLSKEAY DIAVRTLEEV LENCVGLNNS 660 VKSVLEPNTL DVLGFPGFEE ENCDNCLAKS SKKKRTYKKK KVYSEAGGIK IGLQESYQQM 720 DQINSRAHHN DNCYIPQQDT QEELGSRAPN LEGYYGSQEG APGVGQLNSI SPFRDGYYSN 780 QQGLPVLGQL HLIPTHVSHF GAPLSMQGLG QLGFRAPTMQ TSFSNLPDLP VSSTQFNGIA 840 SKHLHDKHLS S* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G018100.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU230043 | 1e-160 | CU230043.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443605.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X2 | ||||
Swissprot | Q3EBQ3 | 0.0 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A3N7G1T8 | 0.0 | A0A3N7G1T8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s01960.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.4 | 0.0 | FAR1-related sequence 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G018100.2 |
Publications ? help Back to Top | |||
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