PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G007300.1

Common Name

POPTR_0016s00900g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 692aa MW: 80354.4 Da PI: 6.1865

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G007300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHe Potri.016G007300.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHE 157 59******************8888.***************************************99877789*********** PP FAR1 89 la 90 l Potri.016G007300.1 158 LL 159 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-19	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-5	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNENFQSDS MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN 240 DSMELLEACK VTKEMDGDFV YDFTTDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS 300 ITYGMLLGVW LGIDNNGKTI FFGCVLLQDE TARSFAWALQ AFVHLMKGKC PQTILTDLEL 360 GLKDAVRSEL PSTRHVISIW NIQPKISSWF FLSLGARYPE FKSMFDDLYH AENADDFEHR 420 WSQMVSMFGF GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT 480 CLRSFFEQVG SSSNFQNQLR QEMQYMLTKT CMPIEEHARN FLTPFAFNDF QHELVLSMQC 540 ALSEMPDGSY LVHHYKKMDV ERLVIWIPED EQIHCTCKEF ESSGMLCRHT LRVFILKNYF 600 QLPEKYYLSR WRRESSLVFY DNQDTQTNDD GWFQEFQSLT ETLLTESSIT KERSDYVHRE 660 LPKELKRLIS EVRKMPESDG AAMDLTLSPS S*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNENFQSDS MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN  240
DSMELLEACK VTKEMDGDFV YDFTTDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS  300
ITYGMLLGVW LGIDNNGKTI FFGCVLLQDE TARSFAWALQ AFVHLMKGKC PQTILTDLEL  360
GLKDAVRSEL PSTRHVISIW NIQPKISSWF FLSLGARYPE FKSMFDDLYH AENADDFEHR  420
WSQMVSMFGF GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT  480
CLRSFFEQVG SSSNFQNQLR QEMQYMLTKT CMPIEEHARN FLTPFAFNDF QHELVLSMQC  540
ALSEMPDGSY LVHHYKKMDV ERLVIWIPED EQIHCTCKEF ESSGMLCRHT LRVFILKNYF  600
QLPEKYYLSR WRRESSLVFY DNQDTQTNDD GWFQEFQSLT ETLLTESSIT KERSDYVHRE  660
LPKELKRLIS EVRKMPESDG AAMDLTLSPS S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G007300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373590.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443543.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443544.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443545.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443546.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443547.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443549.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3N7G1P2	0.0	A0A3N7G1P2_POPTR; Uncharacterized protein
STRING	EOY28958	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Potri.016G007300.1
Entrez Gene	7482643

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]