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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Potri.016G001100.8 | ||||||||
| Common Name | POPTR_0016s00310g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 312aa MW: 34022.1 Da PI: 5.2449 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 107.9 | 5.3e-34 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
Potri.016G001100.8 28 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 82
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 14.485 | 25 | 85 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-32 | 27 | 83 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 7.7E-18 | 27 | 82 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.2E-25 | 28 | 83 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.2E-9 | 30 | 81 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.6E-23 | 111 | 157 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 312 aa Download sequence Send to blast |
MDLDCEAMTM DPINGGNSLN NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL 60 RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDVDKKETGD VLSNSDGSSG MQITEALKLQ 120 MEVQKRLHEQ LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLEDVPGSGV SAPVSGDNCP 180 VSDNKTDPAT PAPTSESPLQ DKVAKECAPT KSLSIDESFS SQHEPLTPDS RCNTGSPAES 240 PRGERSLKKQ MVSMGVAFGK PEMVLTHQIL ESSLNSYPQP HSAFLTREQF DPSSGLSMGN 300 EDQSEVLGSD L* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-24 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00252 | DAP | Transfer from AT2G01060 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Potri.016G001100.8 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024443123.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
| Swissprot | Q9SJW0 | 1e-129 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A2K1X8H0 | 0.0 | A0A2K1X8H0_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0016s00310.1 | 0.0 | (Populus trichocarpa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 1e-114 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Potri.016G001100.8 |
| Entrez Gene | 18106009 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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