PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G001100.6

Common Name

POPTR_0016s00310g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 305aa MW: 33244.3 Da PI: 5.8784

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G001100.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5.1e-34	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Potri.016G001100.6 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-18	20	75	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-32	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-23	104	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MTMDPINGGN SLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG 60 LTIYHVKSHL QKYRLAKYLP DSSSDVDKKE TGDVLSNSDG SSGMQITEAL KLQMEVQKRL 120 HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLEDVPG SGVSAPVSGD NCPVSDNKTD 180 PATPAPTSES PLQDKVAKEC APTKSLSIDE SFSSQHEPLT PDSRCNTGSP AESPRGERSL 240 KKQMVSMGVA FGKPEMVLTH QILESSLNSY PQPHSAFLTR EQFDPSSGLS MGNEDQSEVL 300 GSDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-24	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	21	78	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G001100.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224847	0.0	CU224847.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443123.1	0.0	myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	1e-129	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2K1X8H0	0.0	A0A2K1X8H0_POPTR; Uncharacterized protein
STRING	POPTR_0016s00310.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-115	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.016G001100.6
Entrez Gene	18106009