PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G001100.2 | ||||||||
Common Name | POPTR_0016s00310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 33557.7 Da PI: 6.3184 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 5.2e-34 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Potri.016G001100.2 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 20 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-18 | 20 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 107 | 153 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MTMDPINGGN SLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG 60 LTIYHVKSHL QKYRLAKYLP DSSSDGKKVD KKETGDVLSN SDGSSGMQIT EALKLQMEVQ 120 KRLHEQLEVQ RQLQLRIEAQ GKYLKKIIEE QQRLSGVLED VPGSGVSAPV SGDNCPVSDN 180 KTDPATPAPT SESPLQDKVA KECAPTKSLS IDESFSSQHE PLTPDSRCNT GSPAESPRGE 240 RSLKKQMVSM GVAFGKPEMV LTHQILESSL NSYPQPHSAF LTREQFDPSS GLSMGNEDQS 300 EVLGSDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-24 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G001100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443124.1 | 0.0 | myb family transcription factor PHL7 isoform X3 | ||||
Swissprot | Q9SJW0 | 1e-134 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2I4KK58 | 0.0 | A0A2I4KK58_POPTR; G2-like family protein | ||||
STRING | POPTR_0016s00310.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-110 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G001100.2 |
Entrez Gene | 18106009 |