PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G146300.2 | ||||||||
Common Name | POPTR_0015s12910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 688aa MW: 76685.1 Da PI: 8.2131 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 77 | 98 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH+r+H Potri.015G146300.2 77 KCSKCSREFCSSINYRRHLRVH 98 7********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.346 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MPVVTPVNSI TDVMRPEEGN DSSLDTFIRD AIGRQPLLSF SRPNDKPVQW IQLLNALDQP 60 DYPGWPLLTP LKVQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSGK NRDMLGAFWD 120 KLSEDEAKEI LSFKDVTLEE VPGSSIIKSL TTVIRKPVIS SLTQSCWRAG SALLDLVQGR 180 PSRCPLSSGR LFSILDDASE KTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ 240 KLIKAWLADK DAEALRCQKL LVEEEEAAQR RLAELLERKR QKKLRHKEQK AKEQRQDEKV 300 DVKECIDDTL EAVPQAEQSC PLAISDSDTL GSETLPDDVP SSLEPLLLPR TDEDVDLENQ 360 IVHGGERSKL QGNSHRHMVV TRWHAPSRSQ RNSLSNVFHA SQNSQAPKPG AMEKHGIQRD 420 FKPGPMVNGN RKWSQKPKPE YYGECLKARV KKEVITEPEH EKKGEVLIGS ISVTLGNCSH 480 DESNNLDGAQ DDCLVEHEIS KKKNVQEKHN RPDSVQCGMN RPTVKLWRPV SRNGTKGLIL 540 VENGNRKCQP DGIDGKVEDQ ILFNNSSLRS CAMDDSFGGM ENGSPLGDLN RGGLQFSSHE 600 AKAFLAERWK RAIAAEHVKL ALSPDYQVAA NHSLDIRKQD VIGSAENQLV DVEAQESSTA 660 GAAKAKCKTK PDKGVKLKYI PKQRSIT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 283 | ERKRQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G146300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374614.2 | 0.0 | uncharacterized protein LOC18105897 | ||||
Refseq | XP_024441671.1 | 0.0 | uncharacterized protein LOC18105897 | ||||
TrEMBL | A0A2K1XN27 | 0.0 | A0A2K1XN27_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s12910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-127 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G146300.2 |
Entrez Gene | 18105897 |