PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G146300.1
Common NamePOPTR_0015s12910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 688aa    MW: 76685.1 Da    PI: 8.2131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G146300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000917798223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC++C++ F ++ n++rH+r+H
  Potri.015G146300.1 77 KCSKCSREFCSSINYRRHLRVH 98
                        7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.34676103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MPVVTPVNSI TDVMRPEEGN DSSLDTFIRD AIGRQPLLSF SRPNDKPVQW IQLLNALDQP  60
DYPGWPLLTP LKVQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSGK NRDMLGAFWD  120
KLSEDEAKEI LSFKDVTLEE VPGSSIIKSL TTVIRKPVIS SLTQSCWRAG SALLDLVQGR  180
PSRCPLSSGR LFSILDDASE KTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLIKAWLADK DAEALRCQKL LVEEEEAAQR RLAELLERKR QKKLRHKEQK AKEQRQDEKV  300
DVKECIDDTL EAVPQAEQSC PLAISDSDTL GSETLPDDVP SSLEPLLLPR TDEDVDLENQ  360
IVHGGERSKL QGNSHRHMVV TRWHAPSRSQ RNSLSNVFHA SQNSQAPKPG AMEKHGIQRD  420
FKPGPMVNGN RKWSQKPKPE YYGECLKARV KKEVITEPEH EKKGEVLIGS ISVTLGNCSH  480
DESNNLDGAQ DDCLVEHEIS KKKNVQEKHN RPDSVQCGMN RPTVKLWRPV SRNGTKGLIL  540
VENGNRKCQP DGIDGKVEDQ ILFNNSSLRS CAMDDSFGGM ENGSPLGDLN RGGLQFSSHE  600
AKAFLAERWK RAIAAEHVKL ALSPDYQVAA NHSLDIRKQD VIGSAENQLV DVEAQESSTA  660
GAAKAKCKTK PDKGVKLKYI PKQRSIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G146300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374614.20.0uncharacterized protein LOC18105897
RefseqXP_024441671.10.0uncharacterized protein LOC18105897
TrEMBLA0A2K1XN270.0A0A2K1XN27_POPTR; Uncharacterized protein
STRINGPOPTR_0015s12910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-127C2H2-like zinc finger protein