PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G141100.1
Common NamePOPTR_0015s13390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 287aa    MW: 31751.8 Da    PI: 4.8624
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G141100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35351252101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++i++d++++++isw+e+g+sfvv++++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k+
  Potri.015G141100.1  35 FLTKTFKIVDDHTIDDVISWNEDGSSFVVWNPTLFSRDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRKGEKN 116
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Potri.015G141100.1 117 LLCEIQRRK 125
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3728119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5531124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPLPVEQN SGETPPSPLA AAAGGETSRS IPTPFLTKTF KIVDDHTIDD VISWNEDGSS  60
FVVWNPTLFS RDLLPKFFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNECF RKGEKNLLCE  120
IQRRKLVATV AQVVAAPAAV KVIKTSSNSS SDEQVVISTR SSSPGLSLEL LDENERLRKE  180
NVRLKGELTE MKSLCGNIFS LVSDFESLRE EEEEEVRKVL DLLPMKEEVG DGARIFGVEV  240
GVKRGRELSG DMEVEEDGMQ LRLRQPGGGS SDGVKIEVNG SRNGDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231812415129Heat shock factor protein 1
5d5v_B2e-231812415129Heat shock factor protein 1
5d5v_D2e-231812415129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G141100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140060.0KP014006.1 Populus simonii heat shock transcription factor B2a2 (HsfB2a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321902.20.0heat stress transcription factor B-2a
SwissprotQ9SCW44e-80HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLB9ID560.0B9ID56_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-77heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]