PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G137200.1
Common NamePOPTR_0015s13760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 455aa    MW: 49192 Da    PI: 7.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G137200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08132152526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C ++ + G+C++Gd+C+F H+
  Potri.015G137200.1 132 VCTYWVQ-GHCNRGDTCRFLHS 152
                         7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1553763IPR000571Zinc finger, CCCH-type
SMARTSM003560.573962IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5127153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155127154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7130152IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6131152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6131151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.0E-16152265IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-5158197IPR001680WD40 repeat
SuperFamilySSF509781.71E-46159445IPR017986WD40-repeat-containing domain
PfamPF004002.9E-4161197IPR001680WD40 repeat
PROSITE profilePS5008213.817165206IPR001680WD40 repeat
PROSITE profilePS5029421.331165367IPR017986WD40-repeat-containing domain
PROSITE patternPS006780184198IPR019775WD40 repeat, conserved site
PRINTSPR003203.7E-6184198IPR020472G-protein beta WD-40 repeat
SMARTSM003202.6237274IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.8E-31266445IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0074281318IPR001680WD40 repeat
PROSITE profilePS5008211.31288327IPR001680WD40 repeat
PRINTSPR003203.7E-6305319IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9E-4321358IPR001680WD40 repeat
PfamPF004000.016323357IPR001680WD40 repeat
PRINTSPR003203.7E-6345359IPR020472G-protein beta WD-40 repeat
SMARTSM0032028362405IPR001680WD40 repeat
SMARTSM003204.1408445IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDFDYNGGNT TNTNKRVFNR LGGGQSANDT SNHNHLQQNQ KVCYHWRAGR CNRFPCPFLH  60
RELSAPPTHA AVNGGVGAKR GFVGNDSSSS SFSGRRGNNG TNGNNSNYSN SWGRFGNKGD  120
GRGVRGGSVE KVCTYWVQGH CNRGDTCRFL HSWSLGDGFS LLTQLEGHQK VISGIALPSG  180
SDKLYTGSKD ETVRVWDCQS GQCMGVINLG GEVGCMISEG PWIFVGTPNV VKAWNTQTNT  240
DLSLTGPVGQ VYTLVVGNDL LFAGTQDGSI LVWKFNAATY NFEPAASLND HKMAVVSLVV  300
GANRLYSGSM DHSIKVWSLE TLQCVQTLKD HTSVVMSLLC WEQFLLSCSL DQTIKVWAAT  360
ESGNLEVTYT HKEEHGLLTL CGMHDLEGKP ILLCSSNDSS VHLFDLPSFS EKGKIFAKQE  420
IRAIQTGPGG LFFTGDGTGQ VRVWNSVAVP TATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211534455323Tako8
6g6n_A2e-211534455323Tako8
6g6n_B2e-211534455323Tako8
6g6n_C2e-211534455323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.23210.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G137200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321881.20.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9ID210.0B9ID21_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1