PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G136400.1 | ||||||||
Common Name | CBF2, POPTR_0015s13830g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26846.1 Da PI: 4.7744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f ta++Aa+a++ a+++l+g Potri.015G136400.1 79 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTADMAARAHDVAALALRG 129 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.4E-14 | 79 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 80 | 139 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-32 | 80 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 80 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-30 | 80 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-31 | 81 | 139 | No hit | No description |
PRINTS | PR00367 | 9.0E-9 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDVFCSYSDQ NPIGSMSLLS VLDEQECSYS SVLSDSSITS SVTKGVQPGA IFSDEEVILA 60 SRNPKKRAGR KKFRETRHPV YRGVRRRNSG KWVCEVREPN KKSRIWLGTF PTADMAARAH 120 DVAALALRGR SACLNFADSA WRLPTPASSD AKDIQKAAAE AAEAFRPEGS LGVELTRTGD 180 EVEKVAGTAA GDVFYMDDDA DFGMPGLLAN IAEGMLLPPP NCCGYSGGDS LDNMENNDTD 240 MSLWSFSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 78 | 136 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1084 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G136400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF151457 | 0.0 | EF151457.1 Populus trichocarpa C-repeat binding facor 2 (CBF2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321877.1 | 0.0 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 3e-77 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A9PL44 | 0.0 | A9PL44_POPTR; C-repeat binding facor 2 | ||||
STRING | POPTR_0015s13830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 9e-62 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G136400.1 |
Entrez Gene | 7454469 |
Publications ? help Back to Top | |||
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