PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G104200.2
Common NamePOPTR_0015s11550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 340aa    MW: 38045.9 Da    PI: 8.4598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G104200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-09188235455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Potri.015G104200.2 188 SHSLAERVRRERISERMKILQLLVPGC----DKITGKALMLDEIINYVQSLQ 235
                         8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-16182250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-10182239No hitNo description
Gene3DG3DSA:4.10.280.105.0E-15184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.269184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-9190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAGFSYQHQP LFPDSAFLPS IATPTKNMNN NMYGSFEEAG NMMNTNGFSQ IYSPETFHET  60
PSLDVRFHQS SHPDDHSYKV SLSDNETSLT KKQSTNSSTV VDKLESEHVT QEVTPMARKR  120
KSANGFLNSA QSKFLLQDAR KVKSKRQNKC SGDMKHEEKK PKVEKKVHGE PPAGYIHVRA  180
RRGQATDSHS LAERVRRERI SERMKILQLL VPGCDKITGK ALMLDEIINY VQSLQNQVEF  240
LSMKLASVNP LLYDFGMDRD AFMVRPERLS SMSPPLPSLQ HNSPIQPTAF ADTASATTAT  300
FATEENNYPL IDNSATLFLQ GMRPSDFTTH QWLPNVGCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G104200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442174.10.0transcription factor bHLH137 isoform X2
TrEMBLA0A3N7H0150.0A0A3N7H015_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-49bHLH family protein