PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G095000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 747aa    MW: 84377.9 Da    PI: 9.659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G095000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09540579345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE el+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.015G095000.1 540 SWTPEEYELIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 579
                         7*******************.********9..56777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7464535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-7467554IPR009057Homeodomain-like
SuperFamilySSF466891.95E-8537592IPR009057Homeodomain-like
SMARTSM007170.22537584IPR001005SANT/Myb domain
PROSITE profilePS500907.004539582IPR017877Myb-like domain
PfamPF139213.6E-12541599No hitNo description
Gene3DG3DSA:1.10.10.601.2E-8555592IPR009057Homeodomain-like
PROSITE profilePS500907.619583651IPR017877Myb-like domain
SMARTSM007171.4587653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-7593651IPR009057Homeodomain-like
SuperFamilySSF466892.33E-5631713IPR009057Homeodomain-like
PROSITE profilePS500907.039653706IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MVGGKQRGKK KTKDEDGSLK EESSLKDRLL ASGGESLTPS IEIMKKKKTR RRSEKHEASA  60
EDVGVSSSLS EGNVDVNNAA DKNERKKKKK EKKKKKSEGH GDCSEIVAVS SSLSEGNVDV  120
NNAAEKNEKK KKKSKRHEAC VEDVAVSLSE GNIDVNNAEG RNEKKERKRK LEHGNNEKES  180
QVARKKNKVS EVGEVLEETH MRIEDNMGLQ KNVHVDLVRN SESEVRRDGK KNRKEKNRED  240
RSSTVAPVVN ILDDNRKEEV VGVQKGPGSE GIANMNNGEG RDRKKEKKKK QKKYGGGGGD  300
TEVIESAADG KDAGREESTE IVQDKVESSK KEKKKKKKRH NVVQEAASIQ IMAETMGNQS  360
SVIESDGGNS SSIKNKARDG KLKVNDEGGK KRKKKAKSLG NGSKEKSSKR VTQMEKDVET  420
TGPSEKSSSK ATSKRVSFCE DVEVFPSSDG PSDEKAVGED GLVRGKRFSH EEDEMVKEAV  480
LNYIDVHGLG AEGLNMVLNC KKHPAIVHCW KEIGAALPWR PRQSVYHRAH ILFERGQNSS  540
WTPEEYELIR KFHEKHGSDW KTLAEALGKH RFHVKDTWRR IKLINMKKGK WSQDEYQSLF  600
DFVNLDLRLK AFEERKTKHG MLRDNISWTA ISERLETRTD ALCCQKWYDQ LTSPMVAEGK  660
WLDTDDYRLL MELYDLDACC MEDVDWDNLL EHRSGDLCRK RWNQMVKHLG DHRNKSFADQ  720
VDVLIKRYCP DVLEAREAYN SKPAVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389ERKKKKK
28490RKKKKKE
38491RKKKKKEK
48595KKKKKEKKKKK
5163170KKERKRKL
6329337KKEKKKKKK
7332338KKKKKKR
8389393KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G095000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442598.10.0RNA polymerase I termination factor
TrEMBLA0A2K1XKK60.0A0A2K1XKK6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-137MYB_related family protein